View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0306_high_9 (Length: 260)

Name: NF0306_high_9
Description: NF0306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0306_high_9
NF0306_high_9
[»] chr5 (4 HSPs)
chr5 (30-255)||(18313488-18313713)
chr5 (28-193)||(34378170-34378336)
chr5 (31-193)||(698433-698596)
chr5 (29-193)||(18593315-18593480)
[»] chr3 (11 HSPs)
chr3 (30-193)||(31482956-31483119)
chr3 (29-193)||(34475600-34475763)
chr3 (28-203)||(47235761-47235936)
chr3 (29-203)||(45163918-45164092)
chr3 (29-203)||(20611846-20612019)
chr3 (29-203)||(2392350-2392524)
chr3 (29-184)||(53247981-53248138)
chr3 (29-193)||(17551029-17551189)
chr3 (29-156)||(2394114-2394242)
chr3 (29-104)||(30352285-30352359)
chr3 (28-201)||(43012440-43012613)
[»] chr7 (10 HSPs)
chr7 (20-193)||(47325720-47325894)
chr7 (29-193)||(5860132-5860297)
chr7 (28-193)||(44353406-44353573)
chr7 (51-193)||(37795061-37795204)
chr7 (29-193)||(38306333-38306498)
chr7 (30-193)||(3419500-3419665)
chr7 (29-193)||(10244254-10244419)
chr7 (29-203)||(25160878-25161048)
chr7 (29-134)||(31971978-31972084)
chr7 (83-184)||(33435191-33435291)
[»] chr2 (3 HSPs)
chr2 (29-193)||(10524173-10524337)
chr2 (29-193)||(39338709-39338874)
chr2 (29-193)||(17116723-17116889)
[»] chr8 (12 HSPs)
chr8 (28-193)||(20138498-20138665)
chr8 (29-193)||(9519571-9519737)
chr8 (30-193)||(12898120-12898283)
chr8 (29-192)||(31207206-31207370)
chr8 (29-193)||(37986702-37986867)
chr8 (29-193)||(24995238-24995404)
chr8 (29-193)||(32066139-32066304)
chr8 (29-193)||(41893246-41893410)
chr8 (87-193)||(16457364-16457470)
chr8 (31-193)||(34388852-34389014)
chr8 (83-162)||(22773602-22773681)
chr8 (96-193)||(36630909-36631006)
[»] chr1 (9 HSPs)
chr1 (29-203)||(24449774-24449948)
chr1 (29-193)||(46692663-46692828)
chr1 (29-193)||(5459233-5459398)
chr1 (34-193)||(31585608-31585769)
chr1 (31-192)||(41920525-41920692)
chr1 (78-192)||(30685798-30685912)
chr1 (29-193)||(5389266-5389430)
chr1 (28-158)||(6764224-6764355)
chr1 (96-200)||(24684390-24684493)
[»] chr4 (5 HSPs)
chr4 (29-193)||(8255099-8255264)
chr4 (29-193)||(8268517-8268682)
chr4 (97-193)||(30964513-30964609)
chr4 (33-193)||(30167412-30167573)
chr4 (39-193)||(4305797-4305951)
[»] scaffold0343 (1 HSPs)
scaffold0343 (29-193)||(5777-5943)
[»] scaffold0068 (1 HSPs)
scaffold0068 (51-203)||(35640-35790)
[»] chr6 (2 HSPs)
chr6 (30-193)||(3117565-3117729)
chr6 (29-119)||(10541978-10542069)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 30 - 255
Target Start/End: Original strand, 18313488 - 18313713
Alignment:
Q  30 catcgtcactactcacccatgaagaacaccctaaagaaaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatgatc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||| ||||||    
T  18313488 catcgtcactactcacccatgaagaacaccctaaagaaaaactccaaaatcctaaaacccaaactaagccacatttcgaagagcacctaaacgaatgatc 18313587  T
Q  130 atgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaag-cccaaaaaaccaacttaaagtttatttcagttttcgttttcga 228  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||| ||    
T  18313588 atgcagctatcacaaacctcgcgaccttcaatccaccgaaagagtacaacacaaagtccaaaaaaaccaactt-aagtttatttcagttttcgtttttga 18313686  T
Q  229 gagattcacagccttgttatgagaaaa 255  Q
    ||| ||||||| |||||||||||||||    
T  18313687 gaggttcacagtcttgttatgagaaaa 18313713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 193
Target Start/End: Complemental strand, 34378336 - 34378170
Alignment:
Q  28 tccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatg 126  Q
    |||||||||||||||||||||  ||||||||||| || | |||||||  ||| || |||||||||||| ||||||||| ||||| ||| |||| || | |    
T  34378336 tccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcaaaccccaacacccaagctgagccacattacgaagagcatctaaccgaagg 34378237  T
Q  127 atcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    ||||  || ||||||||||||||||||||| |  || |||||||||| |||| ||||||||||||||    
T  34378236 atcaaacaactatcacaaacctcgcgacctccggtccaccgaaagagcacaaaacaaagcccaaaaa 34378170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 193
Target Start/End: Complemental strand, 698596 - 698433
Alignment:
Q  31 atcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatgatc 129  Q
    ||||||||||||||||||  |||||||||||  | | |||||||  | | || |||||||||||| ||||||||||| ||| |||||||| || | |||     
T  698596 atcgtcactactcacccacaaagaacaccctccaaataaaactctcagaccccaacacccaagctgagccacatttcaaagagcacctaaccgaaggatt 698497  T
Q  130 atgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    |||||||||||||||||||||| ||||   | | || |||||||||||||||||||||||||||    
T  698496 atgcagctatcacaaacctcgcaacctctgaaccacagaaagagtacaacacaaagcccaaaaa 698433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 18593480 - 18593315
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    ||||||||||||||||||||  ||||||| |||  | | |||||||| | | || |||||||||| | |||||||||||||||  ||||||| || | ||    
T  18593480 ccatcgtcactactcacccacaaagaacatcctccaaataaaactcccagaccccaacacccaagttgagccacatttcgaagaacacctaaccgaagga 18593381  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    ||||||| |||||||||| |||||||||| | | | |||||||||| ||||||| |||||||||||    
T  18593380 tcatgcacctatcacaaatctcgcgacctccgaaccaccgaaagagcacaacactaagcccaaaaa 18593315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 9e-45; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 31483119 - 31482956
Alignment:
Q  30 catcgtcactactcacccatgaagaacaccctaaagaaaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatgatc 129  Q
    ||||||||||||| |||||  ||||||||||| || ||||||||  ||| || |||||| ||||| ||||||||||||||| |||||||| || | ||||    
T  31483119 catcgtcactactaacccacaaagaacacccttaaaaaaaactctcaaaccccaacacctaagctgagccacatttcgaagagcacctaaccgaaggatc 31483020  T
Q  130 atgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    ||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  31483019 atgcagctatcacaaacctcgcgacctccaatccaccgaaagagcacaacacaaagcccaaaaa 31482956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 34475600 - 34475763
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaagaaaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatgat 128  Q
    ||||||||||||||||||||  ||||||||||| || ||||||||  | | || |||||| ||||| || |||||||||||| |||||||| || | |||    
T  34475600 ccatcgtcactactcacccacaaagaacacccttaa-aaaaactctcataccccaacacctaagctgagtcacatttcgaagagcacctaaccgaaggat 34475698  T
Q  129 catgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    ||| |||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  34475699 catacagctatcacaaacctcgcgacctccaatccaccgaaagagcacaacacaaagcccaaaaa 34475763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 47235936 - 47235761
Alignment:
Q  28 tccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatg 126  Q
    |||||||||||||||||||||  ||||||||||| || | |||||||  | | || |||||||||||| | ||||||||||||| |||||||| || | |    
T  47235936 tccatcgtcactactcacccacaaagaacaccctcaaaataaaactcgcagaccccaacacccaagctgaaccacatttcgaagagcacctaaccgaagg 47235837  T
Q  127 atcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaaaccaacttaa 203  Q
    ||||||||||||||||||||||||||||||   ||| |||||||||| | ||||||||||||| |||||||||||||    
T  47235836 atcatgcagctatcacaaacctcgcgacctctgatccaccgaaagagcaaaacacaaagccca-aaaaccaacttaa 47235761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 45164092 - 45163918
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    |||||||||||| ||||| |  || |||||||| || | |||||||| | | || |||||||||||||||||||||||||||| |||||||| || | ||    
T  45164092 ccatcgtcactaatcacctacaaataacaccctcaaaataaaactcctagaccccaacacccaagctaagccacatttcgaagagcacctaaccgaagga 45163993  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaaaccaacttaa 203  Q
    ||||||||||||||||||| ||| ||||| | ||| |||||||||| ||||||||||||||| |||||||||||||    
T  45163992 tcatgcagctatcacaaacttcgtgacctccgatccaccgaaagagcacaacacaaagccca-aaaaccaacttaa 45163918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 20612019 - 20611846
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    ||||||||||||||||||||  ||||||||||| |  | |||||||| | | || |||||||||||| || |||||||||||| |||||||| || | ||    
T  20612019 ccatcgtcactactcacccacaaagaacaccctcagaataaaactcctagaccc-aacacccaagctgagtcacatttcgaagagcacctaaccgaagga 20611921  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaaaccaacttaa 203  Q
    |||| |||||||||||||||||||||||| | ||| |||||||||| ||||| ||||||||| |||||||||||||    
T  20611920 tcattcagctatcacaaacctcgcgacctccgatccaccgaaagagcacaacgcaaagccca-aaaaccaacttaa 20611846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 29 - 203
Target Start/End: Original strand, 2392350 - 2392524
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    ||||||||||||||||||||  || ||||||   || | |||||||| | | || |||||||||||| |||||||||| |||| |  ||||| || | ||    
T  2392350 ccatcgtcactactcacccacaaataacacctacaaaataaaactcctagaccccaacacccaagctgagccacattttgaagagatcctaaccgaagga 2392449  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaaaccaacttaa 203  Q
    ||||||||||| ||||||||||||||||| | ||| |||||||||| |||||||||||||| ||||||||||||||    
T  2392450 tcatgcagctagcacaaacctcgcgacctccgatccaccgaaagagcacaacacaaagccc-aaaaaccaacttaa 2392524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 53248138 - 53247981
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccct--aaagaaaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatg 126  Q
    ||||||||||||||||||||  |||||||| ||  ||| ||||||||  | | || ||||||||| || ||||||||||||||| |||| ||| || | |    
T  53248138 ccatcgtcactactcacccacaaagaacactctcaaaataaaaactctcagaccccaacacccaaactgagccacatttcgaagagcacataaccgaagg 53248039  T
Q  127 atcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaa 184  Q
    ||||| || ||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  53248038 atcatacaactatcacaaacctcgcgacctccaatccaccgaaagagcacaacacaaa 53247981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 17551189 - 17551029
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    |||||||||||||||||| |  ||||||||||| || | |||||||  | | || ||||||||| || ||||||||||||||| |||||||| |     |    
T  17551189 ccatcgtcactactcaccgacaaagaacaccctcaaaataaaactctcagaccccaacacccaaactgagccacatttcgaagagcacctaacc-----a 17551095  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    ||||||||||||||||||||||||||||| | ||  | |||||||| |||||||||||||||||||    
T  17551094 tcatgcagctatcacaaacctcgcgacctccgatgcatcgaaagagcacaacacaaagcccaaaaa 17551029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 156
Target Start/End: Original strand, 2394114 - 2394242
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    ||||||||||||||||||||  || ||||||   || | |||||||| | | || |||||||||||| |||||||||| |||| |  ||||| || | ||    
T  2394114 ccatcgtcactactcacccacaaataacacctacaaaataaaactcctagaccccaacacccaagctgagccacattttgaagagatcctaaccgaagga 2394213  T
Q  128 tcatgcagctatcacaaacctcgcgacct 156  Q
    ||||||||||| |||||||||||||||||    
T  2394214 tcatgcagctagcacaaacctcgcgacct 2394242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 30352285 - 30352359
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaagaaaaactccaaaatcctaacacccaagctaagccacatt 104  Q
    |||||||||||||||| |||  |||||||||||||| ||||||||| | | || |||||||||||| |||||||||    
T  30352285 ccatcgtcactactcatccacaaagaacaccctaaa-aaaaactccgagaccccaacacccaagctgagccacatt 30352359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 201
Target Start/End: Complemental strand, 43012613 - 43012440
Alignment:
Q  28 tccatcgtcactactcacccatgaagaacaccct-aaagaaaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatg 126  Q
    ||||||| |||||||||||    ||||||||||| |||  |||||||| | | || |||||||||||| ||||||||||||||| |||||| | || | |    
T  43012613 tccatcgccactactcacctccaaagaacaccctcaaattaaaactcctagaccccaacacccaagctgagccacatttcgaagagcacctgaccgaacg 43012514  T
Q  127 atcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaaaccaactt 201  Q
    |||||||| ||  ||| |||||||||||||   ||  |||||||||| |||| |||||  |  ||||||||||||    
T  43012513 atcatgcaacttccac-aacctcgcgacctctgattcaccgaaagagcacaaaacaaaagctcaaaaaccaactt 43012440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 47325720 - 47325894
Alignment:
Q  20 catcatcatccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcaccta 118  Q
    |||||||  ||||||||||||||||||||  ||||||||||| || | |||||||| | | || |||||||||||| ||||||||||||||| |||||||    
T  47325720 catcatcgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccagaccccaacacccaagctgagccacatttcgaagagcaccta 47325819  T
Q  119 aacgcatgatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    | || | |||||| |||||||||||||||||||||||| | ||| | |||||||| ||| |||||||||||||||    
T  47325820 accgaaggatcattcagctatcacaaacctcgcgacctccgatccatcgaaagagcacagcacaaagcccaaaaa 47325894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 5860132 - 5860297
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    |||||||||||||||| |||  ||||||||||| || | |||||||| | | || |||||||||||| ||||||||||||||| ||||||||  | | ||    
T  5860132 ccatcgtcactactcatccacaaagaacaccctgaaaataaaactcccagaccccaacacccaagctgagccacatttcgaagagcacctaactgaagga 5860231  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    ||||||||||||||||||||||||||||| | | | |||||||||| |||||||||||||||||||    
T  5860232 tcatgcagctatcacaaacctcgcgacctccgaaccaccgaaagagcacaacacaaagcccaaaaa 5860297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 193
Target Start/End: Original strand, 44353406 - 44353573
Alignment:
Q  28 tccatcgtcactactcacccatgaagaacaccctaaagaa--aaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcat 125  Q
    ||||||||||||||||||| |  ||||||||||| || ||  ||||||| | | || |||||||||||   | |||||||||||| |||||||| || |     
T  44353406 tccatcgtcactactcacctacaaagaacaccctcaaaaataaaactcccagaccccaacacccaagccgggtcacatttcgaagagcacctaaccgaag 44353505  T
Q  126 gatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    ||||||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||    
T  44353506 gatcatgcagctatcacaaacctcgcgacctccgatccaccgaaagagcacaacacaaagcccaaaaa 44353573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 193
Target Start/End: Complemental strand, 37795204 - 37795061
Alignment:
Q  51 aagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatgatcatgcagctatcacaaacctc 149  Q
    ||||||||||| || | |||||||  ||| || |||||||||||| ||||||| ||||||| |||||||| || | ||||||||||||||||||||||||    
T  37795204 aagaacaccctcaaaataaaactctcaaaccccaacacccaagctgagccacagttcgaagagcacctaaccgaaggatcatgcagctatcacaaacctc 37795105  T
Q  150 gcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    ||||||| | | | |||||||||| |||||||||||||||||||    
T  37795104 gcgacctccgaaccaccgaaagagcacaacacaaagcccaaaaa 37795061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 38306498 - 38306333
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    |||||||||||||||||| |  ||||||||||| || | |||||||  | | || |||||||||||| |||||||| |||||| |||| ||| || | ||    
T  38306498 ccatcgtcactactcacctacaaagaacaccctcaaaataaaactcacagaccccaacacccaagctgagccacatatcgaagagcacttaaccgaagga 38306399  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    ||||||||||||||||||||||||||||| | | | | |||||||| |||||||||||||||||||    
T  38306398 tcatgcagctatcacaaacctcgcgacctccgaaccatcgaaagagcacaacacaaagcccaaaaa 38306333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 3419500 - 3419665
Alignment:
Q  30 catcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatgat 128  Q
    |||||||||||||||| ||  ||||||||||| || | |||||||| ||| || |||||||||| ||||||||| |||||||||||||||| || | |||    
T  3419500 catcgtcactactcactcacaaagaacacccttaaaataaaactcccaaaccccaacacccaagttaagccacaattcgaagcgcacctaaccgaaggat 3419599  T
Q  129 catgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtaca-acacaaagcccaaaaa 193  Q
    || ||||||||||||||||| | |||||   ||| |||||||||| ||| | ||||||||||||||    
T  3419600 caagcagctatcacaaaccttgtgacctctgatccaccgaaagagcacagaaacaaagcccaaaaa 3419665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 10244419 - 10244254
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacacccta-aagaaaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    ||||||||||||||||||||  |||| ||||||  ||  |||| ||| | | || |||||||||||| ||||||| ||| ||| |||||||| || | ||    
T  10244419 ccatcgtcactactcacccacaaagaccaccctccaactaaaaatcccagacccaaacacccaagctgagccacaattcaaagagcacctaaccgaagga 10244320  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    ||||||| ||||||||||||||||||||| | | | || ||||||| ||||||||||| |||||||    
T  10244319 tcatgcaactatcacaaacctcgcgacctccgaaccactgaaagagcacaacacaaaggccaaaaa 10244254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 25161048 - 25160878
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaagaaaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatgat 128  Q
    ||||||||||||||||||||  ||||||||| | || ||||||||  | | || |||| | ||| | ||||||||||| ||| ||||||||  | | |||    
T  25161048 ccatcgtcactactcacccacaaagaacacctttaa-aaaaactctcagaccccaacatctaagttgagccacatttccaagagcacctaactgaaggat 25160950  T
Q  129 catgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaaaccaacttaa 203  Q
    ||  |||||||||||||||| | ||||| ||||| |||||||||| |||||||  ||||| ||||||||||||||    
T  25160949 cacacagctatcacaaaccttgagacctccaatccaccgaaagagcacaacac--agccc-aaaaaccaacttaa 25160878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 31971978 - 31972084
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    ||||||||||||||||||||  |||||||||||  | | |||||||| | | || |||||||||||| ||||||||||||||| |||||||| || | ||    
T  31971978 ccatcgtcactactcacccacaaagaacaccctccaaataaaactcccagaccccaacacccaagctgagccacatttcgaagagcacctaaccgaagga 31972077  T
Q  128 tcatgca 134  Q
    |||||||    
T  31972078 tcatgca 31972084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 184
Target Start/End: Complemental strand, 33435291 - 33435191
Alignment:
Q  83 aacacccaagctaagccacatttcgaagcgcacctaaacgcatgatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacaca 182  Q
    |||| ||||||| ||||||| ||||||| |||||| | || | ||||||| |||| |||||| ||||||||||| | ||| |||||||||| |||| |||    
T  33435291 aacaaccaagctgagccacaattcgaagagcacctgaccgaaggatcatgtagctttcacaa-cctcgcgacctccgatccaccgaaagagcacaaaaca 33435193  T
Q  183 aa 184  Q
    ||    
T  33435192 aa 33435191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 10524337 - 10524173
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    ||||||||||||||||||||  |||||||||||  | | |||||||| ||| || |||||||||||| |||||||| |||||| |||||||| || | ||    
T  10524337 ccatcgtcactactcacccacaaagaacaccctccaaataaaactcccaaaccccaacacccaagctgagccacatatcgaagagcacctaaccgaagga 10524238  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    ||||||||||||||||||||||||||||| | | | |||||||||| |||||||||||||||||||    
T  10524237 tcatgcagctatcacaaacctcgcgacctccgaac-accgaaagagcacaacacaaagcccaaaaa 10524173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 39338709 - 39338874
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    ||||||||||||||||||||  ||||||||||| || | |||||||| | | |  |||||||||||| || |||| ||||||| |||||||| || | ||    
T  39338709 ccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccagacctcaacacccaagctgagtcacaattcgaagagcacctaaccgaagga 39338808  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    |||| |||||||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||    
T  39338809 tcattcagctatcacaaacctcgcgacctccgatccaccgaaagagcacaacacaaagcccaaaaa 39338874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 17116723 - 17116889
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccct--aaagaaaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatg 126  Q
    ||||||||| ||||||||||  |||||||||||  ||| ||||||||  | | || |||||||||||| ||||||||| ||||| |||||||| ||   |    
T  17116723 ccatcgtcattactcacccacaaagaacaccctcaaaataaaaactctcagaccccaacacccaagctgagccacattacgaagagcacctaaccgatgg 17116822  T
Q  127 atcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    |||| | || |||||||||||||||||||| ||||||| ||||| || |||| |||||||| |||||    
T  17116823 atcaagtagatatcacaaacctcgcgacctccaatctatcgaaaaagcacaaaacaaagcctaaaaa 17116889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 193
Target Start/End: Complemental strand, 20138665 - 20138498
Alignment:
Q  28 tccatcgtcactactcacccatgaagaacaccctaaagaa--aaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcat 125  Q
    ||||||||||||||||||| |  ||||||||||| || ||  ||||||| | | || |||||||||||   | |||||||||||| |||||||| || |     
T  20138665 tccatcgtcactactcacctacaaagaacaccctcaaaaataaaactcccagaccccaacacccaagccgggtcacatttcgaagagcacctaaccgaag 20138566  T
Q  126 gatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    ||||||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||    
T  20138565 gatcatgcagctatcacaaacctcgcgacctccgatccaccgaaagagcacaacacaaagcccaaaaa 20138498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 9519737 - 9519571
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactc-caaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatg 126  Q
    ||||||||||||||||||||  ||||||||||| || | ||||||| || |  || |||||||||||| ||||| ||||||||| |||||||| || |||    
T  9519737 ccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagacccccaacacccaagctgagccatatttcgaagagcacctaaccgaatg 9519638  T
Q  127 atcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    |||||||||||||||||||| |||| |||| | | | |||||||||| |||||||||||||||||||    
T  9519637 atcatgcagctatcacaaacttcgcaacctccgacccaccgaaagagcacaacacaaagcccaaaaa 9519571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 12898120 - 12898283
Alignment:
Q  30 catcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatgat 128  Q
    |||||||||||||||||||  ||||||||||| || | ||||||| || | || |||||||||||| ||||||||||||||| |||||||| || | |||    
T  12898120 catcgtcactactcacccacaaagaacaccctcaaaataaaactctaagaccccaacacccaagctgagccacatttcgaagagcacctaaccgaaggat 12898219  T
Q  129 catgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    || ||||||||||||||||||||||||| | | | | |||||||| |||||||||||||| ||||    
T  12898220 ca-gcagctatcacaaacctcgcgacctccgaaccatcgaaagagcacaacacaaagccccaaaa 12898283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 29 - 192
Target Start/End: Original strand, 31207206 - 31207370
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    ||||||||||||||||||||  ||||||||||| || | |||||||| | |  | |||||||||||| ||||||||||||||| |||||||| || | |     
T  31207206 ccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccatactccaacacccaagctgagccacatttcgaagagcacctaaccgaaggg 31207305  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaa 192  Q
    |||| |||||||||||||||||||||||| | ||| ||||||| || |||||||||| |||||||    
T  31207306 tcattcagctatcacaaacctcgcgacctccgatccaccgaaaaagcacaacacaaatcccaaaa 31207370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 37986702 - 37986867
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    ||||||||| ||||||||||  |||||||||||  | | |||||||| | | |  |||||||||||| ||||||||||||||| |||||||| || | ||    
T  37986702 ccatcgtcattactcacccacaaagaacaccctccaaataaaactcccagaccgaaacacccaagctgagccacatttcgaagagcacctaaccgaagga 37986801  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    ||| ||||||||||||||||||||||||| | | | |||||||||| |||||||||||| ||||||    
T  37986802 tcaggcagctatcacaaacctcgcgacctccgaaccaccgaaagagcacaacacaaagcacaaaaa 37986867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 24995238 - 24995404
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcct-aacacccaagctaagccacatttcgaagcgcacctaaacgcatg 126  Q
    ||||||||||||||||| ||  ||||||||||| || | |||||||| | | ||  |||||||||||| ||||| ||||||||| |||||||| || | |    
T  24995238 ccatcgtcactactcacgcacaaagaacaccctcaaaataaaactcctagacccccaacacccaagctgagccatatttcgaagagcacctaaccgaagg 24995337  T
Q  127 atcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    ||||||||||||||||||||||||||||||   | | || ||||||| |||||||||||||||||||    
T  24995338 atcatgcagctatcacaaacctcgcgacctctgacccactgaaagagcacaacacaaagcccaaaaa 24995404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 32066139 - 32066304
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    ||||||||||||||||| ||  |||||||||||  | | |||||||  | | || |||||||||||| | ||||||||| ||| ||| |||| || ||||    
T  32066139 ccatcgtcactactcactcacaaagaacaccctccaaataaaactctcagaccccaacacccaagctgaaccacatttcaaagagcatctaaccgaatga 32066238  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    |||||||||||||||||||||||| ||||   | | |||||||||| |||||||||||||||||||    
T  32066239 tcatgcagctatcacaaacctcgcaacctctgaaccaccgaaagagcacaacacaaagcccaaaaa 32066304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 41893246 - 41893410
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaagaaa-aactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    ||||||||||||||||||||  ||||||||||| || | | |||||| | | |  |||||||||||| ||||||||||||||| | ||||| | | | ||    
T  41893246 ccatcgtcactactcacccacaaagaacaccctgaaaatagaactcccagacctcaacacccaagctgagccacatttcgaagagtacctata-gaagga 41893344  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    ||||||||||||||||||||| |||||||   | | ||| |||||| |||||||||||||||||||    
T  41893345 tcatgcagctatcacaaaccttgcgacctcttaaccaccaaaagagcacaacacaaagcccaaaaa 41893410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 16457364 - 16457470
Alignment:
Q  87 cccaagctaagccacatttcgaagcgcacctaaacgcatgatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagc 186  Q
    |||||||| ||||||||||| ||| |||||||| | || |||||||||||||||||||||||| |||| | | | | |||||||||| ||||||||||||    
T  16457364 cccaagctgagccacatttcaaagagcacctaaccacaagatcatgcagctatcacaaacctcacgacatccgaaccaccgaaagagcacaacacaaagc 16457463  T
Q  187 ccaaaaa 193  Q
    | |||||    
T  16457464 ctaaaaa 16457470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 193
Target Start/End: Original strand, 34388852 - 34389014
Alignment:
Q  31 atcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatgatc 129  Q
    ||||||||||||||||||  ||||||||||| || | |||||||  | | || |||||||||||| ||||||||   ||||  |||||||  | | ||||    
T  34388852 atcgtcactactcacccacaaagaacaccctcaaaataaaactctcataccccaacacccaagctgagccacatgatgaagaacacctaactgaaggatc 34388951  T
Q  130 atgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    |   |||||||||||||||| |||||| | ||| ||||||| || |||||||||||||||||||    
T  34388952 act-agctatcacaaacctcacgacctacgatccaccgaaatagcacaacacaaagcccaaaaa 34389014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 22773681 - 22773602
Alignment:
Q  83 aacacccaagctaagccacatttcgaagcgcacctaaacgcatgatcatgcagctatcacaaacctcgcgaccttcaatc 162  Q
    ||||||||| || ||||||||||||||| ||||||||  | | ||||||| || |||||||||||||| ||||| |||||    
T  22773681 aacacccaaactgagccacatttcgaagagcacctaacagaaggatcatgtagatatcacaaacctcgtgacctccaatc 22773602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 36631006 - 36630909
Alignment:
Q  96 agccacatttcgaagcgcacctaaacgcatgatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacac-aaagcccaaaaa 193  Q
    ||||||||||||||| |||||| | || | ||||||||||||  ||| ||||||||||||| | ||| | |||||||| |||| || ||||||||||||    
T  36631006 agccacatttcgaagagcacctgaccgaaggatcatgcagctcccac-aacctcgcgacctccgatccatcgaaagagcacaaaacaaaagcccaaaaa 36630909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 29 - 203
Target Start/End: Original strand, 24449774 - 24449948
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    ||||||||||||||||||||  || |||||||| || | |||||||| | | || |||||||||||| |||| |||||||||| |||||||| || | ||    
T  24449774 ccatcgtcactactcacccacaaataacaccctcaaaataaaactcctagaccccaacacccaagctgagccgcatttcgaagagcacctaaccgaagga 24449873  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaaaccaacttaa 203  Q
    ||||||| ||||||||||||||||||||| | ||| ||| |||||| |||||||||| ||| ||||||||||||||    
T  24449874 tcatgcaactatcacaaacctcgcgacctccgatccaccaaaagagcacaacacaaatccc-aaaaaccaacttaa 24449948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 46692663 - 46692828
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    ||||||||||||||||||||  |||||||||||  | | |||||| | | | || |||||||||||| ||||||||||||||| |||| ||| || | ||    
T  46692663 ccatcgtcactactcacccacaaagaacaccctccaaataaaacttccagaccccaacacccaagctgagccacatttcgaagagcacttaaccggagga 46692762  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    | ||||||||||||||||||||||||||| | | | |||||||||| |||||||||||||||||||    
T  46692763 taatgcagctatcacaaacctcgcgacctccgaaccaccgaaagagcacaacacaaagcccaaaaa 46692828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 5459398 - 5459233
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    ||||||||||||||||||||  ||||||||| | || | |||||| | | | || |||||||||||| ||||||||||| ||| ||||||||  | | ||    
T  5459398 ccatcgtcactactcacccacaaagaacaccatcaaaataaaacttccagaccccaacacccaagctgagccacatttcaaagagcacctaactgaagga 5459299  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    |||||||||||||||||||||||| |||| | | | || ||||||| |||||||||||||||||||    
T  5459298 tcatgcagctatcacaaacctcgcaacctccgaaccactgaaagagcacaacacaaagcccaaaaa 5459233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 193
Target Start/End: Original strand, 31585608 - 31585769
Alignment:
Q  34 gtcactactcacccatgaagaacaccctaaaga-aaaactc-caaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatgatcat 131  Q
    |||||||||||||||  ||||||||||| || | ||||||| || |  || |||||||||||| ||||||||||||||| |||||||| |  | ||||||    
T  31585608 gtcactactcacccacaaagaacaccctcaaaataaaactctcagacccccaacacccaagcttagccacatttcgaagagcacctaaccaaaggatcat 31585707  T
Q  132 gcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
     |||||||||||||||||||||||| | | | ||||||| || |||||||||||||||||||    
T  31585708 acagctatcacaaacctcgcgacctccgacccaccgaaatagcacaacacaaagcccaaaaa 31585769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 41920692 - 41920525
Alignment:
Q  31 atcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatg--- 126  Q
    ||||||||||||||||||  || |||||||| || | |||||||||| | || |||||||||||| ||||||||   |||| ||||||||  | | |       
T  41920692 atcgtcactactcacccacaaaaaacaccctcaaaataaaactccaagaccccaacacccaagctgagccacatgatgaagagcacctaactgaaggtta 41920593  T
Q  127 --atcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaa 192  Q
      |||||||||||||||||||||||||||||| | ||| |||||||||| ||||||||||||||||||    
T  41920592 ggatcatgcagctatcacaaacctcgcgacctccgatccaccgaaagagcacaacacaaagcccaaaa 41920525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 30685798 - 30685912
Alignment:
Q  78 atcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatgatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtaca 177  Q
    |||| |||||||||||| |||||||| || | | |||||||| |  | ||||||||||||||||||||||||||||||| | | | |||||||||| |||    
T  30685798 atcccaacacccaagctgagccacatatcaaggagcacctaaccaaaggatcatgcagctatcacaaacctcgcgacctccgaaccaccgaaagagcaca 30685897  T
Q  178 acacaaagcccaaaa 192  Q
    |||||||||||||||    
T  30685898 acacaaagcccaaaa 30685912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 5389266 - 5389430
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    |||||||||||||||||  |  ||||||||||| || | |||||||| | | || |||||||||||| |||||||| |||||| |||| ||| || | ||    
T  5389266 ccatcgtcactactcacttac-aagaacaccctcaaaataaaactcccagaccccaacacccaagctgagccacatatcgaagagcacttaaccgaagga 5389364  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
     |||| ||||| ||||||||||||||||| | | | |||||||||| |||||||||||||||||||    
T  5389365 ccatgtagctaacacaaacctcgcgacctccgaaccaccgaaagagcacaacacaaagcccaaaaa 5389430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 6764224 - 6764355
Alignment:
Q  28 tccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatg 126  Q
    |||||||||||||||||||||  ||||||| ||| || | |||||||| | | || |  | ||||| | ||||||||||||||| |||||||| || | |    
T  6764224 tccatcgtcactactcacccacaaagaacatcctgaaaataaaactcccagaccccagtatccaagttgagccacatttcgaagagcacctaaccgaagg 6764323  T
Q  127 atcatgcagctatcacaaacctcgcgaccttc 158  Q
    | ||||||||||||||||||||| || |||||    
T  6764324 accatgcagctatcacaaacctcacgcccttc 6764355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 24684390 - 24684493
Alignment:
Q  96 agccacatttcgaagcgcacctaaacgcatgatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaaac 195  Q
    ||||||||||||||| |||||| | || | ||||||||| ||  ||||| ||||||||||| | ||| |||||||||| |||| |||||  || ||||||    
T  24684390 agccacatttcgaagagcacctgaccgaaggatcatgcatcttccacaa-cctcgcgacctccgatccaccgaaagagcacaaaacaaaagcccaaaaac 24684488  T
Q  196 caact 200  Q
    |||||    
T  24684489 caact 24684493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 8255264 - 8255099
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    ||||||||||||||||||||  ||||||||||| || | |||||||  | | ||||||||||||||| ||||||||| ||||| ||||||||  |   ||    
T  8255264 ccatcgtcactactcacccacaaagaacaccctcaaaataaaactcacagaccctaacacccaagctgagccacattacgaagagcacctaactgatgga 8255165  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    ||| ||||||||||||||||||||||||| | ||| |||||||||| |||| ||||||||||||||    
T  8255164 tcaagcagctatcacaaacctcgcgacctccgatccaccgaaagagcacaaaacaaagcccaaaaa 8255099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 8268682 - 8268517
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    ||||||||||||||||||||  ||||||||||| || | |||||||  | | ||||||||||||||| ||||||||| ||||| ||||||||  |   ||    
T  8268682 ccatcgtcactactcacccacaaagaacaccctcaaaataaaactcacagaccctaacacccaagctgagccacattacgaagagcacctaactgatgga 8268583  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    ||| ||||||||||||||||||||||||| | ||| |||||||||| |||| ||||||||||||||    
T  8268582 tcaagcagctatcacaaacctcgcgacctccgatccaccgaaagagcacaaaacaaagcccaaaaa 8268517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 97 - 193
Target Start/End: Complemental strand, 30964609 - 30964513
Alignment:
Q  97 gccacatttcgaagcgcacctaaacgcatgatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||| | | | ||| |||||| |||||||||| ||||||||    
T  30964609 gccacatttcgaagagcacctaaccgaatgatcatgcagctatcacaaacctcgcgacctccgaaccaccaaaagagcacaacacaaaacccaaaaa 30964513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 193
Target Start/End: Original strand, 30167412 - 30167573
Alignment:
Q  33 cgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatgatcat 131  Q
    |||||| |||||||||  ||||||||||| || | |||||||| | | || |||||||||| |  |||||||||||||| || | ||| || | | ||||    
T  30167412 cgtcaccactcacccacaaagaacaccctcaaaataaaactcccataccccaacacccaagttgggccacatttcgaagagcgcttaaccgaagggtcat 30167511  T
Q  132 gcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    |||||||||| |||||||||||||| |   | |||||||||| |||||||||| ||||||||    
T  30167512 gcagctatcataaacctcgcgacctccggaccaccgaaagagcacaacacaaaccccaaaaa 30167573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 193
Target Start/End: Complemental strand, 4305951 - 4305797
Alignment:
Q  39 tactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatgatcatgcagct 137  Q
    ||||||||||  |||| |||||| || | |||||||| ||| || || ||||||| | ||||||||| ||||| |||||| | || | |||||||||| |    
T  4305951 tactcacccacaaagatcaccctgaaaataaaactcccaaacccaaatacccaagttgagccacatt-cgaagagcacctcaccgaaggatcatgcagtt 4305853  T
Q  138 atcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    ||||||||||| |||||||     | ||| |||||| ||||||||||||| |||||    
T  4305852 atcacaaaccttgcgacctctggaccaccaaaagagcacaacacaaagcctaaaaa 4305797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 5943 - 5777
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatga 127  Q
    ||||| ||||||||||||||  || |||||||| || | |||||||| | |||| |||||||||||| ||||||||| ||||| |||||||| || | ||    
T  5943 ccatcatcactactcacccacaaaaaacaccctcaaaataaaactcccagatcccaacacccaagctgagccacattacgaagagcacctaaccgaagga 5844  T
Q  128 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtac-aacacaaagcccaaaaa 193  Q
    ||| | ||||||||||||||| ||||||| | |||||||||||||| || || ||||||||||||||    
T  5843 tcaagtagctatcacaaaccttgcgacctccgatctaccgaaagagcacaaaaacaaagcccaaaaa 5777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 203
Target Start/End: Original strand, 35640 - 35790
Alignment:
Q  51 aagaacaccctaaagaaaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatgatcatgcagctatcacaaacctcg 150  Q
    |||||||| ||||| ||||||||| | | || |||||||||||| |||| |||||||||| |||||||| ||   |||||||||||||||||||| ||||    
T  35640 aagaacactctaaa-aaaaactcccacaccccaacacccaagctgagcctcatttcgaagagcacctaaccgatggatcatgcagctatcacaaatctcg 35738  T
Q  151 cgaccttcaatctaccgaaagagtacaacacaaagcccaaaaaaccaacttaa 203  Q
     ||||| | ||| |||||||||| |||||| ||||||| ||||||||||||||    
T  35739 tgacctccgatccaccgaaagagcacaacataaagccc-aaaaaccaacttaa 35790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 3117729 - 3117565
Alignment:
Q  30 catcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaaacgcatgat 128  Q
    ||||||| ||||| |||||  |||||||||||| | | |||||||| | | || |||||||||| | ||||||||||||||| |||| ||| || | |||    
T  3117729 catcgtctctacttacccacaaagaacaccctataaataaaactcccagaccccaacacccaagttgagccacatttcgaagagcacataatcgaaggat 3117630  T
Q  129 catgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 193  Q
    |||||| ||||||||||||||||||||| | | | ||  |||||| |||||||||||||||||||    
T  3117629 catgcaactatcacaaacctcgcgacctccgaaccacataaagagcacaacacaaagcccaaaaa 3117565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 10542069 - 10541978
Alignment:
Q  29 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagcgcacctaa 119  Q
    ||||||||||||||||||||  ||||| |||||  | | |||||| | | | || |||||||||||| ||||||||||||||| ||||||||    
T  10542069 ccatcgtcactactcacccacaaagaataccctccaaataaaacttccagaccccaacacccaagctgagccacatttcgaagagcacctaa 10541978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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