View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0306_low_1 (Length: 527)
Name: NF0306_low_1
Description: NF0306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0306_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 15827497 - 15827722
Alignment:
| Q |
36 |
gtcaagtgtatggtttctctcataaaaaatttcattttgaacattgggatatgactcgcaagtggaatttcttatgatataaccaacattttgtattttg |
135 |
Q |
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| T |
15827497 |
gtcaagtgtatggtttctctcataaaaaatttcattttgaacattgggatatgactcgcaagtggaatttctcatgatataaccaacattttgtattttg |
15827596 |
T |
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| Q |
136 |
atggacatgaaannnnnnncattgtgacctattgtattctcaaccccatagaaatcgtaataaaatttgtggctaaaaaggtcttgctttcaaatagtta |
235 |
Q |
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| T |
15827597 |
atggacatgaaatttgtttcattgtgacctattgtattctcaaccccatagaaatcgtaataaaatttgtggctgaaaaggtcttgctttcaaatagtta |
15827696 |
T |
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| Q |
236 |
aaatagcaatccataactaggagtga |
261 |
Q |
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| T |
15827697 |
aaatagcaatccataactaggagtga |
15827722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 397 - 495
Target Start/End: Original strand, 15827858 - 15827956
Alignment:
| Q |
397 |
aacttagaataaaccacttaacaatctccgaaaacgactcaaaaatttgatactcgaaaaatagctacctttctctaaggcatacaaagtgcaagtata |
495 |
Q |
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| T |
15827858 |
aacttagaataaaccacttaacaatctccggaaaagacgcaaaaatttgatgctcgaaaaatagctacctttctctaaggcatataaagtgcaagtata |
15827956 |
T |
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