View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0306_low_2 (Length: 499)
Name: NF0306_low_2
Description: NF0306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0306_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 29 - 460
Target Start/End: Complemental strand, 33355762 - 33355329
Alignment:
| Q |
29 |
aagagtgtgtgaaatgggttgagacatacttcaaagactgtctttgcaatttgagagatgacatatcattcagtttgggactcatgagtttagtatcatg |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33355762 |
aagagtgtgtgaaatgggttgagacatacttcaaagactgtctttgcaatttgagagatgacatatcattcagtttgggactcatgagtttagtatcatg |
33355663 |
T |
|
| Q |
129 |
gggagttgctgaaattcctcagataatcaccatttttcgcaacaagtcaagccatggaatttcccttgcctttctccttacttgggtagcagggttagtc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33355662 |
gggagttgctgaaattcctcagataatcaccatttttcgcaacaagtcaagccatggaatttcccttgcctttctccttacttgggtagcagggttagtc |
33355563 |
T |
|
| Q |
229 |
aaatattcattatatacacactctcttttttgtttccatcagttatgcatttaatgaaacagttcatcaacnnnnnnncacattctaatacttactagaa |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | |
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| T |
33355562 |
aaatattcattatatacacactctcttttttgtttccatcagttatgcatttaatgaaacagttcatcaactttttttcacattataatacttactagca |
33355463 |
T |
|
| Q |
329 |
aaatccattggatcatgttagttagcttaaatgttatgtagcattga--tattacatattaaagatgtgtctgatgtcaaacatgtgtaggcgctcaaca |
426 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33355462 |
aaatccattggatcatgttagttagcttaaatgttatgtagcattgatctattacatattaaagatgtgtctgatgtcaaacatgtgtaggcgttcaaca |
33355363 |
T |
|
| Q |
427 |
ccaacatgatacaaacacatgtagttacttttaa |
460 |
Q |
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| T |
33355362 |
tccacatgatacaaacacatgtagttacatttaa |
33355329 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 227
Target Start/End: Original strand, 7217385 - 7217557
Alignment:
| Q |
55 |
tacttcaaagactgtctttgcaatttgagagatgacatatcattcagtttgggactcatgagtttagtatcatggggagttgctgaaattcctcagataa |
154 |
Q |
| |
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||||||| |||||||| |||||| | | ||| |||| ||||||| ||| ||| |||| |||||| | | ||||| ||||||||||||||||| || | |
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| T |
7217385 |
tacttcagtgactgtctctgcaatgttaatgataacatttcattcacttttggattcatcagtttaatttgttggggtgttgctgaaattcctcaaatta |
7217484 |
T |
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| Q |
155 |
tcaccatttttcgcaacaagtcaagccatggaatttcccttgcctttctccttacttgggtagcagggttagt |
227 |
Q |
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|||| | |||||| ||||| |||||||| |||| ||| |||||| ||||||||||| || |||||||| |
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| T |
7217485 |
tcactaattttcgtgctaagtctagccatggtgtttctattgtctttcttcttacttgggttgctgggttagt |
7217557 |
T |
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