View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0306_low_5 (Length: 449)
Name: NF0306_low_5
Description: NF0306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0306_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 30 - 440
Target Start/End: Complemental strand, 41896494 - 41896084
Alignment:
| Q |
30 |
cctcctagtgtagcgcttagacttgtagctcgatccgcctatgtaggtaagatggcaaaacttgagtcaaaactaatctatgttatcattaatattacat |
129 |
Q |
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| T |
41896494 |
cctcctagtgtagcgcttagacttgtagctcgatccgcctatgtaggtaagatggcaaaacttgagtcaaaactaatctatgttatcattaatattacat |
41896395 |
T |
|
| Q |
130 |
agcaaattttcagtagtagagtaagttatagaagtattatttaatttcttcatgaaaatcttgatgttgctacaatttgttgatatgtttcagcttttac |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896394 |
agcaaattttcagtagtagagtaagttatagaagtattatttaatttcttcatgaaaatcttgatgttgctacaatttgttgatatgtttcagcttttac |
41896295 |
T |
|
| Q |
230 |
attattatttggggtgagttttcctttctttggagatcttcttgggttctttggtggatttggttttgctcccacatcatattttgtaaggcactcttgt |
329 |
Q |
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| T |
41896294 |
attattatttggggtgagttttcctttctttggagatcttcttgggttctttggtggatttggttttgctcccacgtcatattttgtaaggcactcttgt |
41896195 |
T |
|
| Q |
330 |
cctctcaatttctctatgcttatgtcaaattgtcaaatttttaaatgaattaattataaaatcaaaagatgaattattttcttgtgaattatttcagctt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896194 |
cctctcaatttctctatgcttatgtcaaattgtcaaatttttaaatgaattaattataaaatcaaaagatgaattattttcttgtgaattatttcagctt |
41896095 |
T |
|
| Q |
430 |
cctagtataat |
440 |
Q |
| |
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||||||||||| |
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| T |
41896094 |
cctagtataat |
41896084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 205 - 440
Target Start/End: Complemental strand, 41890707 - 41890482
Alignment:
| Q |
205 |
tttgttgatatgtttcagcttttacattattatttggggtgagttttcctttctttggagatcttcttgggttctttggtggatttggttttgctcccac |
304 |
Q |
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|||||||| | |||||||||||||||||||| ||||| || | |||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41890707 |
tttgttgaaacgtttcagcttttacattattctttggagtcacttttccattctttggtgatcttcttggattctttggtggatttggttttgctcccac |
41890608 |
T |
|
| Q |
305 |
atcatattttgtaaggcactcttgtcctctcaatttctctatgcttatgtcaaattgtcaaatttttaaatgaattaattataaaatcaaaagatgaatt |
404 |
Q |
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|||||||||||||||| ||||||||| ||||||| |||||||||||||||||| ||| ||||||||| ||| | ||| |||| | |||| |
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| T |
41890607 |
ttcatattttgtaaggctctcttgtcc--------tctctattcttatgtcaaattgtcaa--tttaaaatgaattgattctgaaactaaaaagtcaatt |
41890518 |
T |
|
| Q |
405 |
attttcttgtgaattatttcagcttcctagtataat |
440 |
Q |
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||| ||||| |||| |||||||||||||| ||||| |
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| T |
41890517 |
attggcttgttaattgtttcagcttcctagcataat |
41890482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 41890821 - 41890752
Alignment:
| Q |
37 |
gtgtagcgcttagacttgtagctcgatccgcctatgtaggtaagatggcaaaacttgagtcaaaactaat |
106 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||| ||||||| ||| | |||||||| |
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|
| T |
41890821 |
gtgtagcgcttagacttgtagctcgatctgcttatgtaggtaagatgtcaaaactcgaggcgaaactaat |
41890752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 206 - 324
Target Start/End: Original strand, 22551861 - 22551979
Alignment:
| Q |
206 |
ttgttgatatgtttcagcttttacattattatttggggtgagttttcctttctttggagatcttcttgggttctttggtggatttggttttgctcccaca |
305 |
Q |
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||||| || |||| ||||||||||| | || ||||||| | || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22551861 |
ttgttaatttgttgcagcttttacactttttattggggttacattccctttctttggcgatcttcttggcttctttggtggatttggttttgctcccact |
22551960 |
T |
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| Q |
306 |
tcatattttgtaaggcact |
324 |
Q |
| |
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|||||||||||||| |||| |
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| T |
22551961 |
tcatattttgtaagccact |
22551979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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