View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0306_low_6 (Length: 378)

Name: NF0306_low_6
Description: NF0306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0306_low_6
NF0306_low_6
[»] chr5 (1 HSPs)
chr5 (1-363)||(2272376-2272738)
[»] chr7 (1 HSPs)
chr7 (157-231)||(40772478-40772552)
[»] chr4 (1 HSPs)
chr4 (5-81)||(46353872-46353947)


Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 2272376 - 2272738
Alignment:
1 gagtcttcttgtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaattgagacttctctggtttggctattttacagatcatgattcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2272376 gagtcttcttgtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaattgagacttctctggtttggctattttacagatcatgattcat 2272475  T
101 gatccatcagaaagttttgctcaaggattcacacaaatccaagaggaatctatctgtttaattcatctgactagtttataattattgaattgacggtgga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2272476 gatccatcagaaagttttgctcaaggattcacacaaatccaagaggaatctatctgtttaattcatctgactagtttataattattgaattgacggtgga 2272575  T
201 aattgattcatctttatcctcgctctaggaatgtagaataatttacgagatttggctcggtgtctaattttaccattctttttcataaatagcagaagaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2272576 aattgattcatctttatcctcgctctaggaatgtagaataatttacgagatttggctcggtgtctaattttaccattctttttcataaatagcagaagaa 2272675  T
301 tgaataatgtttaaggacagacttaatgttcgtgtccaagacaaagtgaatatatgatgatgt 363  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
2272676 tgaataatgcttaaggacagacttaatgttcgtgtccaagacaaagtgaatatatgttgatgt 2272738  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 40772552 - 40772478
Alignment:
157 tttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaa 231  Q
    |||||| ||||||||||||||| | |||||||||||||  ||||||||||||| ||||||| |||||| ||||||    
40772552 tttaatccatctgactagtttacagttattgaattgacaatggaaattgattcctctttattctcgctttaggaa 40772478  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 46353872 - 46353947
Alignment:
5 cttcttgtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaattgagacttctctggtttggctat 81  Q
    |||||| ||||||||||||||||| ||||||| |||||||| ||||||||| |||| || || || |||||||||||    
46353872 cttcttatgcatttaatatgtattatcaagtgcataatcag-aaggattgggattgtgatttttcaggtttggctat 46353947  T

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