View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0306_low_7 (Length: 374)
Name: NF0306_low_7
Description: NF0306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0306_low_7 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 30 - 368
Target Start/End: Complemental strand, 21324730 - 21324392
Alignment:
| Q |
30 |
aaacttatacttaaatcttcatcttgatttgaaactatcatatgcaaatctcaaaaattggtttaacatcaagctggggtccatacatatatcgtatcaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21324730 |
aaacttatacttaaatcttcatcttgatttgaaactatcatatgcaaatctcaaaaattggtttaacatcaagctggggtccatacatatatcgtatcaa |
21324631 |
T |
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| Q |
130 |
cttatataaacacatacaagtgtatggctaaaaacagtgccatagaggctgaaacattaaaacattaattaaatttttaagtgatatttatttatcttat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21324630 |
cttatataaacacatacaagtgtatggctaaaaacagtgccatagaggctgaaacattaaaacattaattaaatttttaagtgatatttatttatcttat |
21324531 |
T |
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| Q |
230 |
taacatcaaccacttgatcatgttatatataccaagtcccatgttactaagaataataagccaactattccattatcaccgcctagttgtctcttcaact |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21324530 |
taacatcaaccacttgatcatgttatatataccaagtcccatgttactaagaataataagccaactattccattatcaccgcctagttgtctcttcaact |
21324431 |
T |
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| Q |
330 |
tccttagattcactgcaatttcctttgtcttcatctcac |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
21324430 |
tccttagattcactgcaatttcctttgtcttcatctcac |
21324392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 30 - 368
Target Start/End: Original strand, 66103 - 66441
Alignment:
| Q |
30 |
aaacttatacttaaatcttcatcttgatttgaaactatcatatgcaaatctcaaaaattggtttaacatcaagctggggtccatacatatatcgtatcaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
66103 |
aaacttatacttaaatcttcatcttgatttgaaactatcatatgcaaatctcaaaatttggtttaacatcaagctggggtccatacatatatcgtatcaa |
66202 |
T |
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| Q |
130 |
cttatataaacacatacaagtgtatggctaaaaacagtgccatagaggctgaaacattaaaacattaattaaatttttaagtgatatttatttatcttat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
66203 |
cttatataaacacatacaagtgtatggctaaaaacagtgccatagaggctgaaacattaaaacattaattaaatttttaagtgatatttatttatcttat |
66302 |
T |
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| Q |
230 |
taacatcaaccacttgatcatgttatatataccaagtcccatgttactaagaataataagccaactattccattatcaccgcctagttgtctcttcaact |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
66303 |
taacatcaaccacttgatcatgttatatataccaagtcccatgttactaagaataataagccaactattccattatcaccgcctagttgtctcttcaact |
66402 |
T |
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| Q |
330 |
tccttagattcactgcaatttcctttgtcttcatctcac |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
66403 |
tccttagattcactgcaatttcctttgtcttcatctcac |
66441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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