View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0306_low_9 (Length: 347)
Name: NF0306_low_9
Description: NF0306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0306_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 36 - 332
Target Start/End: Original strand, 15827497 - 15827794
Alignment:
| Q |
36 |
gtcaagtgtatggtttctctcataaaaaatttcattttgaacattgggatatgactcgcaagtggaatttcttatgatataaccaacattttgtattttg |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15827497 |
gtcaagtgtatggtttctctcataaaaaatttcattttgaacattgggatatgactcgcaagtggaatttctcatgatataaccaacattttgtattttg |
15827596 |
T |
|
| Q |
136 |
atggacatgaaannnnnnncattgtgacctattgtattctcaaccccatagaaatcgtaataaaatttgtggctaaaaaggtcttgctttcaaatagtta |
235 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15827597 |
atggacatgaaatttgtttcattgtgacctattgtattctcaaccccatagaaatcgtaataaaatttgtggctgaaaaggtcttgctttcaaatagtta |
15827696 |
T |
|
| Q |
236 |
aaatagcaatccataactaggagtga-nnnnnnnnncaactaacaactaagttataatgaaaacagcaaacaaaacacaatataaacagaacacaaaa |
332 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15827697 |
aaatagcaatccataactaggagtgatttttttttccaactaacaactaagttataatgaaaacagcaaacaaaacacaatataaacagaacacaaaa |
15827794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University