View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0307_low_1 (Length: 536)
Name: NF0307_low_1
Description: NF0307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0307_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 47117097 - 47116595
Alignment:
Q |
1 |
gcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaaaataatcgttaaaaggtgatcgatcgagtca |
100 |
Q |
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T |
47117097 |
gcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaaaataatcgttaaaaggtgatcga----gtca |
47117002 |
T |
 |
Q |
101 |
ttgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctccttgaattgaaactaaagatataaaagaaattgg |
200 |
Q |
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T |
47117001 |
ttgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctccttgaattgaaactaaagatataaaagaaattgg |
47116902 |
T |
 |
Q |
201 |
ttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtcagnnnnnnngagatatcataaggaaatgaaat |
300 |
Q |
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T |
47116901 |
ttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtcagaaaaaaagagatatcataaggaaatgaaat |
47116802 |
T |
 |
Q |
301 |
aacaagggtatgaggaagcttggagtggtgtccatctattgtggaaggattggggattcgttcattaacataacatcattgaatgagatgtatgacgtgg |
400 |
Q |
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T |
47116801 |
aacaagggtatgaggaagcttggagtggtgtccatctattgtggaaggattggggattcgttcattaacataacatcattgaatgagatgtatgacgtgg |
47116702 |
T |
 |
Q |
401 |
aaattttctttgtaactgtctccccgaactttcagtaattaataccacaattagcacaaataatttctttcattttctctttccttaccagttttccacc |
500 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
47116701 |
aacttttctttgtaactgtctccccgaactttcagtaattaataccacaattagcacaaataatttctttcattttctctttccttaccagttttccacc |
47116602 |
T |
 |
Q |
501 |
aaataat |
507 |
Q |
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T |
47116601 |
aaataat |
47116595 |
T |
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Alignment Overview ]
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