View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0307_low_1 (Length: 536)

Name: NF0307_low_1
Description: NF0307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0307_low_1
NF0307_low_1
[»] chr7 (1 HSPs)
chr7 (1-507)||(47116595-47117097)


Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 47117097 - 47116595
Alignment:
1 gcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaaaataatcgttaaaaggtgatcgatcgagtca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||    
47117097 gcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaaaataatcgttaaaaggtgatcga----gtca 47117002  T
101 ttgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctccttgaattgaaactaaagatataaaagaaattgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47117001 ttgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctccttgaattgaaactaaagatataaaagaaattgg 47116902  T
201 ttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtcagnnnnnnngagatatcataaggaaatgaaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
47116901 ttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtcagaaaaaaagagatatcataaggaaatgaaat 47116802  T
301 aacaagggtatgaggaagcttggagtggtgtccatctattgtggaaggattggggattcgttcattaacataacatcattgaatgagatgtatgacgtgg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47116801 aacaagggtatgaggaagcttggagtggtgtccatctattgtggaaggattggggattcgttcattaacataacatcattgaatgagatgtatgacgtgg 47116702  T
401 aaattttctttgtaactgtctccccgaactttcagtaattaataccacaattagcacaaataatttctttcattttctctttccttaccagttttccacc 500  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47116701 aacttttctttgtaactgtctccccgaactttcagtaattaataccacaattagcacaaataatttctttcattttctctttccttaccagttttccacc 47116602  T
501 aaataat 507  Q
    |||||||    
47116601 aaataat 47116595  T

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