View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0307_low_4 (Length: 261)
Name: NF0307_low_4
Description: NF0307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0307_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 74 - 227
Target Start/End: Complemental strand, 37036562 - 37036409
Alignment:
| Q |
74 |
agattacctgagaatgagcttccatgtgtggatttgtttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgttttgtctc |
173 |
Q |
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| T |
37036562 |
agattacctgagaatgagcttccatgtgtggatttgtttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgttttgtctc |
37036463 |
T |
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| Q |
174 |
tattggcacttgattatccagctaataagctagcttgttatgtttctgatgatg |
227 |
Q |
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| T |
37036462 |
tattggctcttgattatccagctaataagctagcttgttatgtttctgatgatg |
37036409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 87 - 227
Target Start/End: Complemental strand, 37045889 - 37045749
Alignment:
| Q |
87 |
atgagcttccatgtgtggatttgtttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgttttgtctctattggcacttga |
186 |
Q |
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| T |
37045889 |
atgagcttccacgtgtggatttgtttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgttttgtctctattggcacttga |
37045790 |
T |
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| Q |
187 |
ttatccagctaataagctagcttgttatgtttctgatgatg |
227 |
Q |
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| T |
37045789 |
ttatccagctaataagctagcttgttatgtttctgatgatg |
37045749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 108 - 227
Target Start/End: Complemental strand, 37011838 - 37011719
Alignment:
| Q |
108 |
tgtttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgttttgtctctattggcacttgattatccagctaataagctagc |
207 |
Q |
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| T |
37011838 |
tgtttgtaacaacagcagatccagtgctagaaccaccaataatcacagtgaatacagtgttatcattgttggcacttgattatcctgctaataagctagc |
37011739 |
T |
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| Q |
208 |
ttgttatgtttctgatgatg |
227 |
Q |
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| T |
37011738 |
ttgttatgtttctgatgatg |
37011719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 37027934 - 37027809
Alignment:
| Q |
102 |
tggatttgtttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgttttgtctctattggcacttgattatccagctaataa |
201 |
Q |
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|||| |||||||||||||| |||||||| | || ||||||||||| |||||| |||| || || ||||| | |||||||||||||||||||| || || |
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| T |
37027934 |
tggacttgtttgtgacaacggcagatccagggctagaaccaccaataatcacagtgaatacagtgttgtcattgttggcacttgattatccagcaaacaa |
37027835 |
T |
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| Q |
202 |
gctagcttgttatgtttctgatgatg |
227 |
Q |
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| T |
37027834 |
gctagcatgctatgtttctgatgatg |
37027809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 17656146 - 17656272
Alignment:
| Q |
101 |
gtggatttgtttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgttttgtctctattggcacttgattatccagctaata |
200 |
Q |
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| T |
17656146 |
gtggatttatttgtgacaacagcagacgatgagttagaaccagcaatcatcacaataaacactgttttatcactattagcacttgattacccatctcaca |
17656245 |
T |
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| Q |
201 |
agctagcttgttatgtttctgatgatg |
227 |
Q |
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| T |
17656246 |
agctagcttgttacgtttctgatgatg |
17656272 |
T |
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