View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0308_high_9 (Length: 251)
Name: NF0308_high_9
Description: NF0308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0308_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 44 - 222
Target Start/End: Complemental strand, 15050388 - 15050210
Alignment:
| Q |
44 |
gtgggttaacttgagtgtaagatttgtgaaaaatctaactaaactatccacaggttaaatgtttcaactcttctttggaacaatgtgaaatttcggatgt |
143 |
Q |
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| T |
15050388 |
gtgggttaacttgagtgtaagatttgtgaaaaatctaactaaactatccacaggttaaatgtttcaactcttctttggaacaatgtgaaatttcggatgt |
15050289 |
T |
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| Q |
144 |
aaagaaggttgtgcaaacaaatttgtctgaaggtgtgaatgaacgaggacttaccttgacaggatttctatatcttcat |
222 |
Q |
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| T |
15050288 |
aaagaaggttgtgcaaacaaatttgtctgaaggtgtgaatgaacgagaacttaccttgacatgatttctatatcttcat |
15050210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 17882927 - 17882747
Alignment:
| Q |
42 |
tggtgggttaacttgagtgtaagatttgtgaaaaatctaactaaactatccacaggttaaatgtttcaactcttctttggaacaatgtgaaatttcggat |
141 |
Q |
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| T |
17882927 |
tggtaggttaactttagtataagatttgtgaaacttctaacaatactatctacaggctgtatgtttcaatgctcctatgcaaccatgggaaattgcaaat |
17882828 |
T |
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| Q |
142 |
gtaaagaaggttgtgcaaacaaatttgtctgaaggtgtgaatgaacgaggacttaccttgacaggatttctatatcttcat |
222 |
Q |
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| T |
17882827 |
gtaaagaaggttgtgcaaaaagaattgtctgaaggtgtgaatgaacgaggaattactttgacagggtttctatttcttcat |
17882747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 15017598 - 15017441
Alignment:
| Q |
65 |
atttgtgaaaaatctaactaaactatccacaggttaaatgtttcaactcttctttggaacaatgtgaaatttcggatgtaaagaaggttgtgcaaacaaa |
164 |
Q |
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| T |
15017598 |
atttgtgcaaaatctaactaaactatctacaggttagatgtttcaatgctcctctgaagccacatgaaattttggatgtaaaggaggttgtgaaaaagaa |
15017499 |
T |
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| Q |
165 |
tttgtctgaaggtgtgaatgaacgaggacttaccttgacaggatttctatatcttcat |
222 |
Q |
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| T |
15017498 |
tttgtcagaaggcgtgaatgaacgaggacttacttcaacaggatttctatttcttcat |
15017441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 14775534 - 14775375
Alignment:
| Q |
62 |
aagatttgtgaaaaatctaactaaactatccacaggttaaatgtttcaactcttctttggaacaatgtgaaatttcggatgtaaagaaggttgtgcaaac |
161 |
Q |
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| T |
14775534 |
aagatttgtgaaaaatctaactaaactctctacaggttaaatgttttaatgctccttttcaaccatccgaaattttggttgtaaagaaggttgtgcgaaa |
14775435 |
T |
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| Q |
162 |
aaatttgtctgaaggtgtgaatgaacgaggacttaccttgacaggatttctatatcttca |
221 |
Q |
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| T |
14775434 |
aaaattgcctgaaggtgtgaatgagcggggactttctttggcaggatttatatctcttca |
14775375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 36874192 - 36874367
Alignment:
| Q |
47 |
ggttaacttgagtgtaagatttgtgaaaaatctaactaaactatccacaggttaaatgtttcaactcttctttggaacaatgtgaaatttcggatgtaaa |
146 |
Q |
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| T |
36874192 |
ggttaacatgtgtataagatttgtgaaaaatctaaccaaactatatacaggttagatgtttcaacgctcctctgcaaccagcagaaattgtgggtgtaaa |
36874291 |
T |
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| Q |
147 |
gaaggttgtgcaaacaaatttgtctgaaggtgtgaatgaacgaggacttaccttgacaggatttctatatcttcat |
222 |
Q |
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| T |
36874292 |
gaaggttgtgcaagataaattgtctgaaggtgttaacgaacgaggacttactttgacgggatttctatttcttcat |
36874367 |
T |
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