View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0308_low_1 (Length: 530)
Name: NF0308_low_1
Description: NF0308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0308_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 27 - 506
Target Start/End: Original strand, 2090285 - 2090764
Alignment:
| Q |
27 |
acacattgttttcttataggattcatgacatagtagtggtagacaccacgcacaatattcctagcttgaccatccttatggcaaaacaagaataacccat |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2090285 |
acacattgttttcttataggattcatgacatagtagtggtagacaccacgcacaatattcctagcttgaccatccttatggcaaaacaagaataacccat |
2090384 |
T |
|
| Q |
127 |
tgcatgtgtctataatatttcttgaactgacattgcaacacatcactaatgagcaccaattaaaaaattgttctaggccataaaatgggtgaggggaaag |
226 |
Q |
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| T |
2090385 |
tgcatgtgtctataatatttcttgaacttacattgcaacacatcactaatgagcaccaattaaaaaattgttgtaggccataaaatgggtgaggggaaag |
2090484 |
T |
|
| Q |
227 |
gtgaggaaacaccaaaggttgtaatggatactcctttggaagtgttgtgattagaatgcgattacgccatgagtgcgagacacacatagcctttgattga |
326 |
Q |
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| T |
2090485 |
gtgaggaaacaccaaaggttgtaatggatactcctttggaagtgttgtggttaggatgcgattacgccatgagtgcgagacacacatagcctttgattga |
2090584 |
T |
|
| Q |
327 |
tccttcatagatagcccaccaaagatttttgtttgaagctctgtggggagacggttgaataaggatttaggcttccttatccccattgtcctcttctttc |
426 |
Q |
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| T |
2090585 |
tccttcatagatagcccaccaaagatttttgtttgaagctctgtggggagatggttgaataaggatttaggcttccttatccccattgtcctcttctttc |
2090684 |
T |
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| Q |
427 |
taaaaattttaccctccatttaaagagtgattatgattatcaagaagaattgataaagataatgataggcgagtgtgatg |
506 |
Q |
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| T |
2090685 |
taaaaattttaccctccatttaaagagtgattatgattatcaagaagaattgataaagataatgataggcgagtgtgatg |
2090764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 425
Target Start/End: Complemental strand, 2878809 - 2878654
Alignment:
| Q |
270 |
gttgtgattagaatgcgattacgccatgagtgcgagacacacatagcctttgattgatccttcatagatagcccaccaaagatttttgtttgaagctctg |
369 |
Q |
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|||||| |||||| | ||||||||||| | ||||||||||||||| ||||||||||||| || || | || || ||| ||||| ||||||| | | |
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| T |
2878809 |
gttgtgtttagaacgtgattacgccattcattcgagacacacatagcttttgattgatcctccaacgacaacctacaaaatattttcgtttgaatattta |
2878710 |
T |
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| Q |
370 |
tggggagacggttgaataaggatttaggcttccttatccccattgtcctcttcttt |
425 |
Q |
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| T |
2878709 |
tggggagattgttgaagaaggatctgggcttccttttccccatagttctcttcttt |
2878654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 2727332 - 2727373
Alignment:
| Q |
291 |
cgccatgagtgcgagacacacatagcctttgattgatccttc |
332 |
Q |
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| T |
2727332 |
cgccatgagtgtgagacacacatagcttttgattgatccttc |
2727373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 2879052 - 2878944
Alignment:
| Q |
27 |
acacattgttttcttataggattcatgacatagtagtggtagacaccacgcacaatattcctagcttgaccatccttatggcaaaacaagaataacccat |
126 |
Q |
| |
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|||||||||||| | | ||||||| ||||||||| | ||||||||||||| || || |||| | |||||| || ||||||||||| | ||| |||| |
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| T |
2879052 |
acacattgttttgtgactggattcaggacatagtaataatagacaccacgcaagatgttggtagcctcaccatcattgtggcaaaacaatagtaagccat |
2878953 |
T |
|
| Q |
127 |
tgcatgtgt |
135 |
Q |
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||||||||| |
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| T |
2878952 |
tgcatgtgt |
2878944 |
T |
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