View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0308_low_2 (Length: 523)
Name: NF0308_low_2
Description: NF0308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0308_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 37 - 393
Target Start/End: Complemental strand, 5374012 - 5373656
Alignment:
| Q |
37 |
gaacctgtggattggaactgttgagtgtgtatgattgatgaagattcnnnnnnnnnnnnnnnnatcgattcagagtttcaactcgaattcttctgaacaa |
136 |
Q |
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| T |
5374012 |
gaacctgtggattggaactgttgagtgtgtatgattgatgaagattcttttttgttttgttttatcgattcagagtatcaactcgaattcttctgaacaa |
5373913 |
T |
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| Q |
137 |
ttcatcggtaattagagctcattaaacaattaatttcggtgtgaaaatgtaacaaattataaaaagtaaggattttttaattttgctgaagtggagcaat |
236 |
Q |
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| T |
5373912 |
ttcatcggtaattagagctcattaaacaattaatttcggtgtgaaaatgtaacaaattataaaaagtaaggattttttaattttgctgaagtggagcaat |
5373813 |
T |
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| Q |
237 |
tataggttgtcaatgtctttgagggacaaccagtaaagtagtgttgctactttctttgccttctttttcaaaaaatttgatgtttaatgataactactat |
336 |
Q |
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| T |
5373812 |
tataggtggtcaatgtctttgagggacaaccagtaaagtagtgttgctactttctttgccttctttttcaaaaaatttgatgtttaatgataactactat |
5373713 |
T |
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| Q |
337 |
acatgcggctgcaaataattggaggtaggatatcagtggagtacttgtttctactac |
393 |
Q |
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| T |
5373712 |
acatgcggctgcaaataattggaggtaggatatcagtggagtacttgtttctactac |
5373656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 459 - 523
Target Start/End: Complemental strand, 5373590 - 5373526
Alignment:
| Q |
459 |
gtactaggatccaaaacaaatttcaaataattaatctccaaaatatatgaaactctccattttga |
523 |
Q |
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| T |
5373590 |
gtactaggatccaaaacaaatttcaaataattaatctccaaaatatatgaaactctccattttga |
5373526 |
T |
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