View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0308_low_3 (Length: 457)
Name: NF0308_low_3
Description: NF0308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0308_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 29 - 448
Target Start/End: Original strand, 3731206 - 3731621
Alignment:
| Q |
29 |
atttttgctactgtgcgttcacttaggaatgccttcactgctttccacaacatcttaaagccagaaccagcattaataataaagagtttatttagagtct |
128 |
Q |
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| T |
3731206 |
atttttgctactgtgcgttcacttaggaatgccttcactgctttccacaacatcttaaagccagaaccagcattaataataaagagtttatttagagtct |
3731305 |
T |
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| Q |
129 |
gcnnnnnnnnnnnnntagatgaactttaatcaacttcaatagggaaactactacaataaaaatttaagaattcgtctttaactttttatgttattattgt |
228 |
Q |
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| T |
3731306 |
gcaaaaaaaaaaa--tagatgaactttaatcaacttcaatagggaaactactacaataaaaatttaagaattcgtctttaactttttatgttattattgt |
3731403 |
T |
|
| Q |
229 |
tgtaaactttgaaaactatataaccattgtcatattatcaaataatctaacttaatcacacattaaaatagcagtcatgtcacatatatccaaatcatct |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
3731404 |
tgtaaactttgaaaactatataaccattgtcatattatcaaataatctaacttaatcacacatt--aatagcattcatgtcacatatatccaaatcatct |
3731501 |
T |
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| Q |
329 |
gctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatgaagatgtaccttgcaggctttgagaaattag |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731502 |
gctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatgaagatgtaccttgcaggctttgagaaattag |
3731601 |
T |
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| Q |
429 |
acattccctagaagaataat |
448 |
Q |
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| T |
3731602 |
acattccctagaagaataat |
3731621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 313 - 448
Target Start/End: Original strand, 11683800 - 11683935
Alignment:
| Q |
313 |
tatatccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatgaagatgtaccttgca |
412 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11683800 |
tataaccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataattgctatcaatcttctgaatttccatgaagatttaccttgca |
11683899 |
T |
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| Q |
413 |
ggctttgagaaattagacattccctagaagaataat |
448 |
Q |
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| T |
11683900 |
ggctctgagaaattagacattccctagaagaataat |
11683935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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