View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0308_low_5 (Length: 408)
Name: NF0308_low_5
Description: NF0308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0308_low_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 66 - 408
Target Start/End: Original strand, 37903675 - 37904017
Alignment:
| Q |
66 |
accatagagagcaaaggctgcgttgtgttgaacagaaccattctttgtgtcaagaagatcaagcagaggctctatacctccattataagcaataccagct |
165 |
Q |
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| T |
37903675 |
accatagagagcaaaagctgcgttgtgttgaacggaaccattctttgtgtcaagaagatcaagcagaggctctatacctccattataagcaataccagct |
37903774 |
T |
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| Q |
166 |
tgattgtgtgagtcctaacatgaattatataaacatttaggattgatttcgataaattaatttccatatacagataaatactggttgcaaatgataatca |
265 |
Q |
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| T |
37903775 |
tgattgtgtgagtcctaacatgaattatataaacatttaggattgatttcgataaattaattcccatatacagataaatactggttgcaaatgataatca |
37903874 |
T |
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| Q |
266 |
cctgtgccaacctcccaagtgcaaaagttgacatttccctaagctgtaaatctgaagacttaagcatctcaattaaggggtttatagcccctctttgggc |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37903875 |
cctgtgccaacctcccaagtgcaaaagttgacatttccctaagctgtaaatctgaagacttaagcatctcaattaaggggtttatagcccctctttgggc |
37903974 |
T |
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| Q |
366 |
aatgcgaatctgcatgaaccatgtatgaggatcaataagagaa |
408 |
Q |
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| T |
37903975 |
aatgtgaatctgcatgaaccatgtatgaggatcaataagagaa |
37904017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 66 - 408
Target Start/End: Original strand, 37910186 - 37910528
Alignment:
| Q |
66 |
accatagagagcaaaggctgcgttgtgttgaacagaaccattctttgtgtcaagaagatcaagcagaggctctatacctccattataagcaataccagct |
165 |
Q |
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| T |
37910186 |
accatagagagcaaaagctgcgttgtgttgaacggaaccattctttgtgtcaagaagatcaagcagaggctctatacctccattataagcaataccagct |
37910285 |
T |
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| Q |
166 |
tgattgtgtgagtcctaacatgaattatataaacatttaggattgatttcgataaattaatttccatatacagataaatactggttgcaaatgataatca |
265 |
Q |
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| T |
37910286 |
tgattgtgtgagtcctaacatgaattatataaacatttaggattgatttcgataaattaattcccatatacagataaatactggttgcaaatgataatca |
37910385 |
T |
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| Q |
266 |
cctgtgccaacctcccaagtgcaaaagttgacatttccctaagctgtaaatctgaagacttaagcatctcaattaaggggtttatagcccctctttgggc |
365 |
Q |
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| T |
37910386 |
cctgtgccaacctcccaagtgcaaaagttgacatttccctaagctgtaaatctgaagacttaagcatctcaattaaggggtttatagcccctctttgggc |
37910485 |
T |
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| Q |
366 |
aatgcgaatctgcatgaaccatgtatgaggatcaataagagaa |
408 |
Q |
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| T |
37910486 |
aatgtgaatctgcatgaaccatgtatgaggatcaataagagaa |
37910528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 3480564 - 3480624
Alignment:
| Q |
6 |
gataccgcaactctttgtcctggaattgataacgatagcaaacacaaatttagcatccaaa |
66 |
Q |
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| T |
3480564 |
gataccgcaactctttgtcctggaattcataacgatggcaaacacaaatttagcattcaaa |
3480624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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