View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0308_low_6 (Length: 327)

Name: NF0308_low_6

Description: NF0308

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF0308_low_6

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 213; E-Value: 1e-117

Query Start/End: Original strand, 65 - 327

Target Start/End: Original strand, 24438698 - 24438962

Alignment:

Q	65	aaagaactaataattgtgtaatcaagnnnnnnnn-gccggtggttagtgctcagggtgtgcgagtgttgtaaatcctggcaagtttgatttctaaggata	163	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24438698	aaagaactaataattgtgtaatcaagaaaaaaaaagccggtggttagtgctcagggtgtgcgagtgatgtaaatcctggcaagttcgatttctaaggata	24438797	T

Q	164	aaaagcaatgctttcaaatttctccaaaacaaaggtaagaaagaaa-gtatgcttatgatctttgtaatctataattgagaacaacacacagaaccctct	262	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24438798	aaaagcaatgctttcaaatttctccaaaacaaagataagaaagaaaagtatgcttatgatctttgtaatctataattgagaacaacacacagaaccctct	24438897	T

Q	263	atatatagatcaacagttcaattagagtaaacaattattttcgcaaaaaactttattatttatcc	327	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24438898	atatatagatcaacagttcaattagagtaaacaattattttcgcaaaaaactttattatttatcc	24438962	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 158 - 211

Target Start/End: Original strand, 24464000 - 24464053

Alignment:

Q	158	aggataaaaagcaatgctttcaaatttctccaaaacaaaggtaagaaagaaagt	211	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|
T	24464000	aggataaaaagctaagctttcaaatatctccaagacaaagataacaaagaaagt	24464053	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]