View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0308_low_7 (Length: 324)
Name: NF0308_low_7
Description: NF0308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0308_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 30 - 314
Target Start/End: Original strand, 3480564 - 3480848
Alignment:
| Q |
30 |
gataccgcaactctttgtcctggaattgataacgatagcaaacacaaatttagcattcaaaacgatgaatcaactaaaattacaataaatgagatataat |
129 |
Q |
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| T |
3480564 |
gataccgcaactctttgtcctggaattcataacgatggcaaacacaaatttagcattcaaaacgatgaatcaactaaaattacaataaatgagatataat |
3480663 |
T |
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| Q |
130 |
gtaaccattgcacataacataaatttgatataagttgaaaagataacaagtcatttagcacttaaacaaataacaacagaagaaagaaactaaatactcg |
229 |
Q |
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| T |
3480664 |
gtaaccattgcacataacataaatttgatataagttgaaaagataacaagtcatttagcacttaaacaaataacaacagaagaaagaaactaaatactcg |
3480763 |
T |
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| Q |
230 |
ttgtagtatacctgatggcctataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaagaatctgtg |
314 |
Q |
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| T |
3480764 |
ttgtagtatacctgatggcctataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaagaatctgtg |
3480848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 207 - 314
Target Start/End: Original strand, 3456354 - 3456461
Alignment:
| Q |
207 |
agaagaaagaaactaaatactcgttgtagtatacctgatggcctataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaag |
306 |
Q |
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| T |
3456354 |
agaagaaataaacacaatactcactgtaatatacctgatggccaataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaag |
3456453 |
T |
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| Q |
307 |
aatctgtg |
314 |
Q |
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| T |
3456454 |
aatctgtg |
3456461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 149
Target Start/End: Original strand, 3456210 - 3456292
Alignment:
| Q |
67 |
gcaaacacaaatttagcattcaaaacgatgaatcaactaaaattacaataaatgagatataatgtaaccattgcacataacat |
149 |
Q |
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| T |
3456210 |
gcaaaaacaaatttagcatccaaaatgatgaatcaactaaaacttaaatagaagatatataatttaaccattacacataacat |
3456292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 240 - 309
Target Start/End: Complemental strand, 48694426 - 48694357
Alignment:
| Q |
240 |
cctgatggcctataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaagaat |
309 |
Q |
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| T |
48694426 |
cctgatggccaataacaacaggagcattttggagtataaaatgcaagaaattatctgctctcttcagaat |
48694357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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