View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0308_low_8 (Length: 286)
Name: NF0308_low_8
Description: NF0308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0308_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 10001059 - 10001145
Alignment:
| Q |
12 |
acctccttcttatacttctccatattattgcatgcctttagtagtttctgaattatctctagctgtcattttataataaagtattag |
98 |
Q |
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| T |
10001059 |
acctccttcttatacttctccatattgttgcatgccttcagtagtttctgaattatctctagctgtcattttataataaagttttag |
10001145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 38909308 - 38909276
Alignment:
| Q |
100 |
aatgtatcttacgattcataataagattcaaat |
132 |
Q |
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| T |
38909308 |
aatgtatcttacgattcataataagattcaaat |
38909276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 7295705 - 7295740
Alignment:
| Q |
93 |
tattagtaatgtatcttacgattcataataagattc |
128 |
Q |
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| T |
7295705 |
tattagtaatgtatcttacaattcataataagattc |
7295740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 10001613 - 10001648
Alignment:
| Q |
93 |
tattagtaatgtatcttacgattcataataagattc |
128 |
Q |
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| T |
10001613 |
tattagtaatgcatcttacgattcataataagattc |
10001648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 127
Target Start/End: Original strand, 2402709 - 2402743
Alignment:
| Q |
93 |
tattagtaatgtatcttacgattcataataagatt |
127 |
Q |
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| T |
2402709 |
tattagtaatgtatcttacgattcatagtaagatt |
2402743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 27935506 - 27935449
Alignment:
| Q |
97 |
agtaatgtatcttacgattcataataagattcaaataccgcgattcagaaaatagttctt |
156 |
Q |
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| T |
27935506 |
agtaatgtatcatatgattcataataagattcaatt--cacgtttcagaaaatagttctt |
27935449 |
T |
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