View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0309_high_5 (Length: 401)

Name: NF0309_high_5
Description: NF0309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0309_high_5
NF0309_high_5
[»] chr3 (12 HSPs)
chr3 (33-388)||(46739448-46739801)
chr3 (238-358)||(46719696-46719816)
chr3 (241-344)||(26837104-26837207)
chr3 (245-359)||(38741305-38741419)
chr3 (242-339)||(37999503-37999600)
chr3 (237-319)||(43104464-43104546)
chr3 (241-305)||(15450263-15450326)
chr3 (241-317)||(38337412-38337487)
chr3 (237-308)||(52398972-52399042)
chr3 (237-310)||(40819735-40819808)
chr3 (262-306)||(32490004-32490048)
chr3 (262-306)||(52491944-52491988)
[»] scaffold0180 (1 HSPs)
scaffold0180 (202-395)||(22948-23142)
[»] chr6 (7 HSPs)
chr6 (241-360)||(18605039-18605158)
chr6 (247-370)||(930968-931092)
chr6 (241-370)||(10608200-10608330)
chr6 (241-345)||(28534803-28534907)
chr6 (245-341)||(1034763-1034859)
chr6 (264-341)||(9428033-9428110)
chr6 (262-306)||(33018225-33018269)
[»] chr1 (10 HSPs)
chr1 (241-360)||(32538394-32538513)
chr1 (237-358)||(49611453-49611574)
chr1 (241-339)||(48686081-48686177)
chr1 (262-314)||(6076032-6076084)
chr1 (241-317)||(31788211-31788286)
chr1 (255-339)||(37689065-37689148)
chr1 (255-337)||(50268328-50268409)
chr1 (241-310)||(38618268-38618336)
chr1 (241-317)||(14924712-14924787)
chr1 (241-317)||(14925277-14925352)
[»] chr8 (11 HSPs)
chr8 (245-361)||(30272140-30272256)
chr8 (241-341)||(41348182-41348282)
chr8 (241-339)||(35759151-35759249)
chr8 (241-360)||(41092210-41092330)
chr8 (247-352)||(36935675-36935780)
chr8 (241-370)||(42573617-42573745)
chr8 (245-332)||(42111556-42111643)
chr8 (246-336)||(35387381-35387470)
chr8 (241-317)||(43924528-43924603)
chr8 (241-317)||(43924953-43925028)
chr8 (242-317)||(43972021-43972095)
[»] chr4 (18 HSPs)
chr4 (241-361)||(53289511-53289631)
chr4 (245-360)||(39413513-39413628)
chr4 (241-370)||(11680314-11680444)
chr4 (241-370)||(11688593-11688723)
chr4 (241-370)||(12590083-12590213)
chr4 (241-370)||(25655519-25655649)
chr4 (238-358)||(52758603-52758723)
chr4 (241-370)||(46764290-46764420)
chr4 (247-355)||(3619042-3619150)
chr4 (245-339)||(49399474-49399568)
chr4 (241-345)||(31634141-31634246)
chr4 (255-339)||(7988200-7988280)
chr4 (240-308)||(15481072-15481139)
chr4 (261-317)||(47523276-47523332)
chr4 (260-316)||(54007629-54007685)
chr4 (241-317)||(10421516-10421591)
chr4 (260-316)||(54007537-54007593)
chr4 (261-317)||(6680277-6680333)
[»] chr7 (9 HSPs)
chr7 (241-360)||(41224733-41224853)
chr7 (241-339)||(44896084-44896182)
chr7 (241-360)||(29314619-29314739)
chr7 (241-358)||(33687643-33687760)
chr7 (241-317)||(29007133-29007209)
chr7 (261-333)||(36845121-36845193)
chr7 (280-339)||(32870341-32870396)
chr7 (241-274)||(29006385-29006418)
chr7 (261-317)||(46757481-46757537)
[»] chr5 (4 HSPs)
chr5 (241-365)||(42654873-42654996)
chr5 (262-306)||(8040390-8040434)
chr5 (241-274)||(8320912-8320945)
chr5 (237-270)||(24027668-24027701)
[»] chr2 (17 HSPs)
chr2 (246-341)||(29921446-29921541)
chr2 (241-345)||(5006214-5006318)
chr2 (241-345)||(40992260-40992365)
chr2 (237-310)||(14487964-14488037)
chr2 (241-345)||(16426591-16426696)
chr2 (261-317)||(36476681-36476737)
chr2 (242-317)||(4976440-4976514)
chr2 (242-317)||(4994347-4994421)
chr2 (238-333)||(23875275-23875369)
chr2 (237-275)||(37996560-37996598)
chr2 (241-274)||(6610021-6610054)
chr2 (237-270)||(7994088-7994121)
chr2 (241-274)||(15562018-15562051)
chr2 (262-314)||(4479640-4479692)
chr2 (262-310)||(14573319-14573367)
chr2 (262-306)||(38834445-38834489)
chr2 (262-314)||(42369701-42369753)
[»] scaffold0155 (1 HSPs)
scaffold0155 (241-345)||(17377-17482)
[»] scaffold0069 (1 HSPs)
scaffold0069 (251-345)||(1844-1938)
[»] scaffold0071 (1 HSPs)
scaffold0071 (241-305)||(11865-11928)
[»] scaffold0189 (1 HSPs)
scaffold0189 (241-308)||(12803-12869)
[»] scaffold0129 (1 HSPs)
scaffold0129 (241-300)||(42524-42583)
[»] scaffold0041 (1 HSPs)
scaffold0041 (262-314)||(27279-27331)


Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 33 - 388
Target Start/End: Original strand, 46739448 - 46739801
Alignment:
Q  33 agtaaattgagcttcgtggaagatgaatggatttggaatattgatcaatccttgtgtgaggtcttatcaaaaaattccaacccaaaaataatataaatgc 132  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46739448 agtaaattgagcttcgtgaaagatgaatggatttggaatattgatcaatccttgtgtgaggtcttatcaaaaaattccaacccaaaaataatctaaatgc 46739547  T
Q  133 ggggcatgagaagaggtttgagaaacctgtgggaatctctcaaaaa-ggaaatccttcatggcgataaagtgggtgccatttagcct-ggaatgtctagn 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  46739548 ggggcatgagaagaggtttgagaaacctgtgggaatctctcaaaaagggaaatccttcatggcgataaagtgggtgccatttagcctgggaatgtctagt 46739647  T
Q  231 nnnnnnccatcatgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatctt 330  Q
          |    ||||||||||||| |||||||||||  ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  46739648 tttttcc---tatgggaaagttag-tttgaaccatttaattaaatagggaacataatttcatcatggtctctcaacactaaatttttgtcacatcatctt 46739743  T
Q  331 ccaccaccacccttctcccctacctttgtgtgtttccctcaactgtaattgtggcttc 388  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  46739744 ccaccaccacccttctcccatacctttgtgcatttccctcaactgtaattgtggcttc 46739801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 238 - 358
Target Start/End: Original strand, 46719696 - 46719816
Alignment:
Q  238 catcatgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccac 337  Q
    |||||||||||||||||||||   |||||||||||||||||||||| ||||||| ||| ||||||||||| ||||| |||   ||  |||||||||||||    
T  46719696 catcatgggaaagttagtttttggccattagattaaatagggaacacaattttaccatggtctctcaacattaaatattttctaccacatcttccaccac 46719795  T
Q  338 cacccttctcccctacctttg 358  Q
    ||| ||||||||| |||||||    
T  46719796 cactcttctcccccacctttg 46719816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 241 - 344
Target Start/End: Complemental strand, 26837207 - 26837104
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccac 340  Q
    ||||||||| |||||||| |||||||  ||||| ||||||||| ||||||| ||| ||||||||||||| |||||||  |||||||||||||||||||||    
T  26837207 catgggaaaattagtttttaaccattgaattaagtagggaacaaaattttaccatggtctctcaacactcaattttttccacatcatcttccaccaccac 26837108  T
Q  341 cctt 344  Q
    ||||    
T  26837107 cctt 26837104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 245 - 359
Target Start/End: Original strand, 38741305 - 38741419
Alignment:
Q  245 ggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccaccctt 344  Q
    ||||||||||||||   |||||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||  |||  ||||||||||||| || |||    
T  38741305 ggaaagttagtttttggccattagattaaatagggaacacaattttaccatggtctctcaacactaaatattttccaccacatcttccaccacgactctt 38741404  T
Q  345 ctcccctacctttgt 359  Q
    |||||| ||||||||    
T  38741405 ctcccccacctttgt 38741419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 242 - 339
Target Start/End: Original strand, 37999503 - 37999600
Alignment:
Q  242 atgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccacca 339  Q
    ||||||||||||||||| |||||||  ||||| ||||||||| ||||||| |||  |||||||||||| |||||||  ||||||||||||||||||||    
T  37999503 atgggaaagttagtttttaaccattgaattaagtagggaacaaaattttaccatgatctctcaacactcaattttttccacatcatcttccaccacca 37999600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 319
Target Start/End: Complemental strand, 43104546 - 43104464
Alignment:
Q  237 ccatcatgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgt 319  Q
    |||||||||||||||| || || ||||||||||| ||||    || |||||||||||||| |||||| |||||| ||||||||    
T  43104546 ccatcatgggaaagttggtatttaaccattagatcaaatcaataaaataattttatcatactctctccacactagatttttgt 43104464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 15450263 - 15450326
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaa 305  Q
    ||||||||||||| | |||| |||||||||||| ||| ||||||| |||||||||||||| ||||    
T  15450263 catgggaaagttaatcttga-ccattagattaagtagagaacatatttttatcatagtctttcaa 15450326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 38337487 - 38337412
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaattttt 317  Q
    |||||||||| || |||||| || ||||||||||||| ||||||| ||||||||||| | |||||||| | ||||||    
T  38337487 catgggaaagctaattttga-ccgttagattaaatagagaacatatttttatcatagacactcaacaccagattttt 38337412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 308
Target Start/End: Complemental strand, 52399042 - 52398972
Alignment:
Q  237 ccatcatgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacac 308  Q
    ||||||||||||||| | |||||| |||||||||||||||| ||| | | |||||| |||||||| ||||||    
T  52399042 ccatcatgggaaagtaaattttga-ccattagattaaatagagaatacatttttatgatagtctcccaacac 52398972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 40819735 - 40819808
Alignment:
Q  237 ccatcatgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacacta 310  Q
    ||||||||||||||||  ||||  |||||||||| ||||| | |||||| | ||||| ||||| ||||||||||    
T  40819735 ccatcatgggaaagttgattttttaccattagatcaaataagaaacatagtcttatcttagtcactcaacacta 40819808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 32490004 - 32490048
Alignment:
Q  262 ccattagattaaatagggaacataattttatcatagtctctcaac 306  Q
    ||||||||||||||| |||||||| || ||||||| |||||||||    
T  32490004 ccattagattaaataaggaacatatttctatcatactctctcaac 32490048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 52491944 - 52491988
Alignment:
Q  262 ccattagattaaatagggaacataattttatcatagtctctcaac 306  Q
    ||||||||||||||| |||||||| || ||||||| |||||||||    
T  52491944 ccattagattaaataaggaacatatttctatcatactctctcaac 52491988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 202 - 395
Target Start/End: Complemental strand, 23142 - 22948
Alignment:
Q  202 tgggtgccatttagcctgg-aatgtctagnnnnnnnccatcatgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtct 300  Q
    ||||||||||||||||||| |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23142 tgggtgccatttagcctgggaatgtctagttttttcccatcatgggaaagttagttttgaaccattagattaaatagggaacataattttatcatggtct 23043  T
Q  301 ctcaacactaaatttttgtcacatcatcttccaccaccacccttctcccctacctttgtgtgtttccctcaactgtaattgtggcttcatctcac 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||| ||||||    
T  23042 ctcaacactaaatttttgtcacatcatcttccaccaccacccttctctcctacctttgtgcgttttcctcaactgtaattgtggcttcttctcac 22948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 241 - 360
Target Start/End: Original strand, 18605039 - 18605158
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccac 340  Q
    ||||||||||||| |||| |||||||  ||||| ||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||| |||||     
T  18605039 catgggaaagttaatttttaaccattgaattaagtagggaacataattttatcatggtctctcaacactaaattttttccacatcatcttccatcaccaa 18605138  T
Q  341 ccttctcccctacctttgtg 360  Q
    ||||||||||| ||||||||    
T  18605139 ccttctccccttcctttgtg 18605158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 247 - 370
Target Start/End: Original strand, 930968 - 931092
Alignment:
Q  247 aaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccacccttct 346  Q
    ||||||||||||  ||||||||||||||||||||||| ||| |||| || ||||||||||||||||| |||   ||||||||||||||||||||||||||    
T  930968 aaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctcaacactaaatctttccaacatcatcttccaccaccacccttct 931067  T
Q  347 -cccctacctttgtgtgtttccctc 370  Q
     ||||||||||||||| ||| ||||    
T  931068 ccccctacctttgtgtcttttcctc 931092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 241 - 370
Target Start/End: Complemental strand, 10608330 - 10608200
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccac 340  Q
    ||||||||||||||||||  ||||||||||||||||||||||| ||| |||| || |||||||| ||||| || |||  |||||||||||||||||||||    
T  10608330 catgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctcagcactagatcttttccacatcatcttccaccaccac 10608231  T
Q  341 ccttct-cccctacctttgtgtgtttccctc 370  Q
    |||||| ||||||| ||||||| ||| ||||    
T  10608230 ccttctccccctacatttgtgtattttcctc 10608200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 241 - 345
Target Start/End: Original strand, 28534803 - 28534907
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccac 340  Q
    |||||||| ||||||||| ||| ||| |||||||||||||||| ||||||| ||||||||||||||||| |||||||  ||||||||||||||||||||     
T  28534803 catgggaaggttagtttttaactattggattaaatagggaacaaaattttaccatagtctctcaacactcaattttttccacatcatcttccaccaccaa 28534902  T
Q  341 ccttc 345  Q
    |||||    
T  28534903 ccttc 28534907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 245 - 341
Target Start/End: Original strand, 1034763 - 1034859
Alignment:
Q  245 ggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccacc 341  Q
    |||||||||||||| |||||||||||||||||||| ||| |||||||||||  ||||||||||  ||||||||  ||||||||||||||||||||||    
T  1034763 ggaaagttagtttttaaccattagattaaatagggtacacaattttatcatgatctctcaacatcaaatttttcccacatcatcttccaccaccacc 1034859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 341
Target Start/End: Complemental strand, 9428110 - 9428033
Alignment:
Q  264 attagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccacc 341  Q
    ||||||||||||| || ||||||||||||| |  |||||||||| ||||||||   ||||||||||||||||||||||    
T  9428110 attagattaaatatggtacataattttatcgtgatctctcaacattaaattttccccacatcatcttccaccaccacc 9428033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 33018225 - 33018269
Alignment:
Q  262 ccattagattaaatagggaacataattttatcatagtctctcaac 306  Q
    ||||||||||||||  |||||||| |||||||||| |||||||||    
T  33018225 ccattagattaaatgaggaacatatttttatcatactctctcaac 33018269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 241 - 360
Target Start/End: Complemental strand, 32538513 - 32538394
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccac 340  Q
    ||||| |||||||||||| |||||||  ||||| ||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||| |||||     
T  32538513 catggaaaagttagtttttaaccattgaattaagtagggaacataatgttatcatggtctctcaacactaaatttttttcacatcatcttccatcaccaa 32538414  T
Q  341 ccttctcccctacctttgtg 360  Q
    ||||||||||| ||||||||    
T  32538413 ccttctccccttcctttgtg 32538394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 237 - 358
Target Start/End: Complemental strand, 49611574 - 49611453
Alignment:
Q  237 ccatcatgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccacca 336  Q
    ||||||||||||| ||||||||   |||||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||  |||  ||||||||||||    
T  49611574 ccatcatgggaaaattagtttttggccattagattaaatagggaacacaattttaccatggtctctcaacactaaatattttccaccacatcttccacca 49611475  T
Q  337 ccacccttctcccctacctttg 358  Q
    |||| ||||||||| |||||||    
T  49611474 ccactcttctcccccacctttg 49611453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 339
Target Start/End: Complemental strand, 48686177 - 48686081
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccacca 339  Q
    ||||||||||||  ||||| ||||||||||||| || |||||||||| |||| ||||||||||||||||| | |||| ||||| |||||||||||||||    
T  48686177 catgggaaagttt-ttttggaccattagattaagtaaggaacataatattataatagtctctcaacactata-ttttctcacaccatcttccaccacca 48686081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 6076032 - 6076084
Alignment:
Q  262 ccattagattaaatagggaacataattttatcatagtctctcaacactaaatt 314  Q
    ||||||||||||||  |||| | | ||||||||||||||||||||||||||||    
T  6076032 ccattagattaaatgaggaatacatttttatcatagtctctcaacactaaatt 6076084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 31788286 - 31788211
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaattttt 317  Q
    ||||||||||||| |||| ||||||||||| |||||| ||||||| ||||| ||||| | |||||||| | ||||||    
T  31788286 catgggaaagttaatttt-aaccattagataaaatagagaacatacttttaccatagacactcaacaccagattttt 31788211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 339
Target Start/End: Complemental strand, 37689148 - 37689065
Alignment:
Q  255 ttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccacca 339  Q
    ||||| || |||||||||| || |||||||||| |||| |||||||||||||| || | |||| ||||| |||| ||||||||||    
T  37689148 ttttggactattagattaagtaaggaacataatattataatagtctctcaacattata-ttttctcacaccatcctccaccacca 37689065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 337
Target Start/End: Complemental strand, 50268409 - 50268328
Alignment:
Q  255 ttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccac 337  Q
    ||||| || |||||||||| || |||||||||| |||| ||| ||||| ||||||| |||||  ||||| |||||||||||||    
T  50268409 ttttggacaattagattaagtaaggaacataatattataataatctcttaacactatattttc-tcacaccatcttccaccac 50268328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 38618268 - 38618336
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacacta 310  Q
    |||||||||||||  ||||| |||||||||||| ||| ||||| | | ||||||||| ||||||||||||    
T  38618268 catgggaaagttaagtttga-ccattagattaagtagtgaacacattcttatcatagactctcaacacta 38618336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 14924712 - 14924787
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaattttt 317  Q
    |||||||||| || |||||| || ||| ||||||||| ||||||| ||||||||||| | |||||||| | ||||||    
T  14924712 catgggaaagctaattttga-ccgttaaattaaatagagaacatatttttatcatagacactcaacaccagattttt 14924787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 14925352 - 14925277
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaattttt 317  Q
    |||||||||| || |||||| ||||||||| || ||| ||||||| ||||||||||| | |||||||| | ||||||    
T  14925352 catgggaaagctaattttga-ccattagataaactagagaacatacttttatcatagacactcaacaccagattttt 14925277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 245 - 361
Target Start/End: Original strand, 30272140 - 30272256
Alignment:
Q  245 ggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccaccctt 344  Q
    ||||||||| |||| |||||||||||||||||||| ||| |||||||| ||  ||||||||||  ||||||||  |||||||||||||||||||||||||    
T  30272140 ggaaagttaatttttaaccattagattaaatagggtacacaattttattatgatctctcaacatcaaattttttccacatcatcttccaccaccaccctt 30272239  T
Q  345 ctcccctacctttgtgt 361  Q
    |||||||||||||||||    
T  30272240 ctcccctacctttgtgt 30272256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 41348182 - 41348282
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccac 340  Q
    |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||||||||||  ||||||||  |||||||||||||||||||||    
T  41348182 catgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaacatcaaatttttcccacatcatcttccaccaccac 41348281  T
Q  341 c 341  Q
    |    
T  41348282 c 41348282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 241 - 339
Target Start/End: Complemental strand, 35759249 - 35759151
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccacca 339  Q
    |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||||||||||  ||||||||  ||||||||||||||||||||    
T  35759249 catgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaacatcaaatttttcccacatcatcttccaccacca 35759151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 241 - 360
Target Start/End: Original strand, 41092210 - 41092330
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtc-acatcatcttccaccacca 339  Q
    ||||| |||||||||||| ||||||| |||||||||||||||| ||||||||||| |||| |||||||   |||||| ||  ||||||||||||||||||    
T  41092210 catggaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacacactatttttttcttcatcatcttccaccacca 41092309  T
Q  340 cccttctcccctacctttgtg 360  Q
     ||||||||||||||||||||    
T  41092310 tccttctcccctacctttgtg 41092330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 352
Target Start/End: Original strand, 36935675 - 36935780
Alignment:
Q  247 aaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccacccttct 346  Q
    ||||||| |||| ||  |||||||||||||||| ||| |||||||||||  ||||||||||  ||||||||  |||||||||||||||||||||||||||    
T  36935675 aaagttaatttttaataattagattaaatagggtacacaattttatcatgatctctcaacatcaaattttttccacatcatcttccaccaccacccttct 36935774  T
Q  347 ccccta 352  Q
    ||||||    
T  36935775 ccccta 36935780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 241 - 370
Target Start/End: Original strand, 42573617 - 42573745
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccac 340  Q
    |||| |||| ||||||||  ||||||| |||||||||||||||  || |||| |||||||||||||| ||||| |||  |||||||||||||||||||||    
T  42573617 catgagaaaattagtttttgaccattaaattaaatagggaacacgatgttattatagtctctcaacattaaatctttcccacatcatcttccaccaccac 42573716  T
Q  341 ccttctcccctacctttgtgtgtttccctc 370  Q
    ||||| ||| ||||||||||| ||| ||||    
T  42573717 ccttc-cccttacctttgtgtcttttcctc 42573745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 332
Target Start/End: Original strand, 42111556 - 42111643
Alignment:
Q  245 ggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttcc 332  Q
    ||||||||||||||  ||||||| |||| |||||||| ||||||||||||| |||||||||||||| ||||||  |||||||||||||    
T  42111556 ggaaagttagtttttgaccattaaattagatagggaatataattttatcatggtctctcaacactacattttttccacatcatcttcc 42111643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 336
Target Start/End: Complemental strand, 35387470 - 35387381
Alignment:
Q  246 gaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccacca 336  Q
    |||||||||||||  |||||| ||||| ||||| |||| | ||||||||| ||||||||| |||| ||||||| |||||||||||||||||    
T  35387470 gaaagttagtttttgaccatttgattagataggaaacacacttttatcat-gtctctcaatactacatttttgccacatcatcttccacca 35387381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 43924528 - 43924603
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaattttt 317  Q
    |||||||||| || |||||| || ||||||||||||| ||||||| ||||||||||  | |||||||| ||||||||    
T  43924528 catgggaaagctaattttga-ccgttagattaaatagagaacatatttttatcataaacactcaacaccaaattttt 43924603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 43925028 - 43924953
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaattttt 317  Q
    |||| |||||||| |||||| || ||||||||||||| ||||||| ||||||||||| | |||||||| | ||||||    
T  43925028 catgagaaagttaattttga-ccgttagattaaatagagaacatatttttatcatagacactcaacaccagattttt 43924953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 43972095 - 43972021
Alignment:
Q  242 atgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaattttt 317  Q
    |||||||||||| |||| ||||||||||| |||||| ||||||| ||||| ||||| | |||||||| | ||||||    
T  43972095 atgggaaagttaatttt-aaccattagataaaatagagaacatacttttaccatagacactcaacaccagattttt 43972021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 241 - 361
Target Start/End: Original strand, 53289511 - 53289631
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccac 340  Q
    ||||||||||||| |||| || ||||||||||||||||| ||| ||||||||||| |||||| ||||  ||||||||  |||||||||||||||||||||    
T  53289511 catgggaaagttaatttttaatcattagattaaatagggtacacaattttatcatggtctctgaacatcaaatttttcccacatcatcttccaccaccac 53289610  T
Q  341 ccttctcccctacctttgtgt 361  Q
    |||||| ||||||||||||||    
T  53289611 ccttcttccctacctttgtgt 53289631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 245 - 360
Target Start/End: Complemental strand, 39413628 - 39413513
Alignment:
Q  245 ggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccaccctt 344  Q
    |||||||||||||| ||||||| |||||| ||| ||||||||||||||||| ||||||| |||||||||||||  |||||||||||||| ||||| ||||    
T  39413628 ggaaagttagtttttaaccattggattaagtagagaacataattttatcatggtctctcgacactaaattttttccacatcatcttccatcaccaacctt 39413529  T
Q  345 ctcccctacctttgtg 360  Q
    ||||||| ||||||||    
T  39413528 ctccccttcctttgtg 39413513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 241 - 370
Target Start/End: Original strand, 11680314 - 11680444
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccac 340  Q
    ||||||||||||||||||  ||||||||||||||||||||||| ||| |||| || |||||||| ||||| || |||  |||||||||||||||||||||    
T  11680314 catgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctcagcactagatctttcccacatcatcttccaccaccac 11680413  T
Q  341 ccttct-cccctacctttgtgtgtttccctc 370  Q
    | |||| ||||||||||||||| ||| ||||    
T  11680414 ctttctccccctacctttgtgtcttttcctc 11680444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 241 - 370
Target Start/End: Original strand, 11688593 - 11688723
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccac 340  Q
    ||||||||||||||||||  ||||||||||||||||||||||| ||| |||| || |||||||| ||||| || |||  |||||||||||||||||||||    
T  11688593 catgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctcagcactagatctttcccacatcatcttccaccaccac 11688692  T
Q  341 ccttct-cccctacctttgtgtgtttccctc 370  Q
    | |||| ||||||||||||||| ||| ||||    
T  11688693 ctttctccccctacctttgtgtcttttcctc 11688723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 241 - 370
Target Start/End: Complemental strand, 12590213 - 12590083
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccac 340  Q
    ||||||||||||||||||  ||||||||||||||||||||||| ||| |||| || |||||||| ||||| || |||  |||||||||||||||||||||    
T  12590213 catgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctcagcactagatctttcccacatcatcttccaccaccac 12590114  T
Q  341 ccttct-cccctacctttgtgtgtttccctc 370  Q
    | |||| ||||||||||||||| ||| ||||    
T  12590113 ctttctccccctacctttgtgtcttttcctc 12590083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 241 - 370
Target Start/End: Complemental strand, 25655649 - 25655519
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccac 340  Q
    ||||||||||||||||||  |||||||||||||||||| |||| ||| |||| || |||||||| ||||| || |||  |||||||||||||||||||||    
T  25655649 catgggaaagttagtttttgaccattagattaaataggaaacacaatgttattatggtctctcagcactagatctttcccacatcatcttccaccaccac 25655550  T
Q  341 ccttct-cccctacctttgtgtgtttccctc 370  Q
    |||||| ||||||||||||||| ||| ||||    
T  25655549 ccttctccccctacctttgtgtcttttcctc 25655519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 238 - 358
Target Start/End: Complemental strand, 52758723 - 52758603
Alignment:
Q  238 catcatgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccac 337  Q
    |||||||||||||||||||||   |||||||||||||||||||||| ||||||| ||||||||||||||| ||||| |||  |||  |||||||||||||    
T  52758723 catcatgggaaagttagtttttggccattagattaaatagggaacacaattttaccatagtctctcaacattaaatattttccaccacatcttccaccac 52758624  T
Q  338 cacccttctcccctacctttg 358  Q
    ||| ||||| ||| |||||||    
T  52758623 cactcttctgccccacctttg 52758603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 241 - 370
Target Start/End: Original strand, 46764290 - 46764420
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccac 340  Q
    ||||||||||||||||||  ||||||| |||||||||| |||| ||| |||| || |||||||| ||||| || |||  |||||||||||||||||||||    
T  46764290 catgggaaagttagtttttgaccattaaattaaataggaaacacaatgttattatggtctctcagcactagatctttcccacatcatcttccaccaccac 46764389  T
Q  341 ccttctcccc-tacctttgtgtgtttccctc 370  Q
    |||||||||| ||||||||||| ||| ||||    
T  46764390 ccttctccccatacctttgtgtcttttcctc 46764420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 247 - 355
Target Start/End: Original strand, 3619042 - 3619150
Alignment:
Q  247 aaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccacccttct 346  Q
    |||||||  ||| ||| |||||||||||||||  ||| |||||||||||  |||||||||| |||||||||  |||||||||||||||||||||||||||    
T  3619042 aaagttaagttttaactattagattaaataggatacacaattttatcatgatctctcaacattaaatttttcccacatcatcttccaccaccacccttct 3619141  T
Q  347 cccctacct 355  Q
    |||||||||    
T  3619142 cccctacct 3619150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 245 - 339
Target Start/End: Complemental strand, 49399568 - 49399474
Alignment:
Q  245 ggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccacca 339  Q
    |||||||||||||| |||||||||||||||||||| | | ||||||||||| |||||||||||  ||||||||  ||||||||||||||||||||    
T  49399568 ggaaagttagtttttaaccattagattaaatagggtatacaattttatcatggtctctcaacatcaaatttttcccacatcatcttccaccacca 49399474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 241 - 345
Target Start/End: Original strand, 31634141 - 31634246
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtc-acatcatcttccaccacca 339  Q
    |||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| |||| |||||||   |||||| ||  ||||||||||||||||||    
T  31634141 catgggaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacacgctatttttttcttcatcatcttccaccacca 31634240  T
Q  340 cccttc 345  Q
     |||||    
T  31634241 tccttc 31634246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 255 - 339
Target Start/End: Complemental strand, 7988280 - 7988200
Alignment:
Q  255 ttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccacca 339  Q
    ||||| ||||||||||||| || |||||||||| |||||||||||||||||||||| |||||    ||| |||||||||||||||    
T  7988280 ttttggaccattagattaagtaaggaacataatattatcatagtctctcaacactatatttt----acaacatcttccaccacca 7988200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 308
Target Start/End: Original strand, 15481072 - 15481139
Alignment:
Q  240 tcatgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacac 308  Q
    ||||||||||| || |||||| || ||||||||||||| ||||||| ||||||||||| ||||||||||    
T  15481072 tcatgggaaagctaattttga-ccgttagattaaatagagaacatatttttatcatagactctcaacac 15481139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 47523276 - 47523332
Alignment:
Q  261 accattagattaaatagggaacataattttatcatagtctctcaacactaaattttt 317  Q
    |||||||||||||||| |||||| |||||||||||||||||| | ||||| ||||||    
T  47523276 accattagattaaataaggaacacaattttatcatagtctcttatcactagattttt 47523332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 54007629 - 54007685
Alignment:
Q  260 aaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttt 316  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||| ||||| |||||    
T  54007629 aaccattagattaaataaggaacacaattttatcatagtctttcatcactagatttt 54007685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 10421591 - 10421516
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaattttt 317  Q
    |||||||||| || |||||| || ||||||||||||| ||||||| ||||||||||| | |||||||| | ||||||    
T  10421591 catgggaaagctaattttga-ccgttagattaaatagagaacatatttttatcatagacactcaacaccagattttt 10421516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 54007593 - 54007537
Alignment:
Q  260 aaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttt 316  Q
    |||||||| |||||||| |||||| |||||||||||||||| ||| ||||| |||||    
T  54007593 aaccattatattaaataaggaacacaattttatcatagtctttcatcactagatttt 54007537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 6680333 - 6680277
Alignment:
Q  261 accattagattaaatagggaacataattttatcatagtctctcaacactaaattttt 317  Q
    ||||||||||||| ||  ||||||| |||||||||||  ||||||||||| ||||||    
T  6680333 accattagattaagtaaagaacatagttttatcatagattctcaacactagattttt 6680277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 241 - 360
Target Start/End: Complemental strand, 41224853 - 41224733
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtc-acatcatcttccaccacca 339  Q
    |||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| |||| |||||||   |||||| ||  ||||||||||||||||||    
T  41224853 catgggaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacacactatttttttcttcatcatcttccaccacca 41224754  T
Q  340 cccttctcccctacctttgtg 360  Q
     ||||||||||||||||||||    
T  41224753 tccttctcccctacctttgtg 41224733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 241 - 339
Target Start/End: Original strand, 44896084 - 44896182
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccacca 339  Q
    |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||||||||||  ||||||||  ||||||||||||||||||||    
T  44896084 catgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaacatcaaatttttcccacatcatcttccaccacca 44896182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 241 - 360
Target Start/End: Original strand, 29314619 - 29314739
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtc-acatcatcttccaccacca 339  Q
    |||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| |||| |||||||   |||||| ||  ||||||||||||||||||    
T  29314619 catgggaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacacactatttttttcttcatcatcttccaccacca 29314718  T
Q  340 cccttctcccctacctttgtg 360  Q
     ||||||||||||| ||||||    
T  29314719 tccttctcccctacttttgtg 29314739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 241 - 358
Target Start/End: Complemental strand, 33687760 - 33687643
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccac 340  Q
    |||| ||||||||||||| |||||||  ||||| ||||||||||||| ||||||| ||||||||||||||||  |||  |||||||||||||| |||||     
T  33687760 catgagaaagttagtttttaaccattgaattaagtagggaacataatgttatcatggtctctcaacactaaaaattttccacatcatcttccatcaccaa 33687661  T
Q  341 ccttctcccctacctttg 358  Q
    ||||||||||| ||||||    
T  33687660 ccttctccccttcctttg 33687643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 29007209 - 29007133
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagg-gaacataattttatcatagtctctcaacactaaattttt 317  Q
    |||||||||||||||||| ||||||||||||||| ||| | || |||||||||||| |||| || |||||| ||||||    
T  29007209 catgggaaagttagtttttaaccattagattaaagaggagtac-taattttatcatggtctatccacactatattttt 29007133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 36845193 - 36845121
Alignment:
Q  261 accattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttcca 333  Q
    ||||||||||||  || |||||||||| ||||||||||| |||||||||| ||| || | |||| ||||||||    
T  36845193 accattagattatgtaaggaacataatattatcatagtccctcaacactagattatttttacattatcttcca 36845121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 32870341 - 32870396
Alignment:
Q  280 aacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccacca 339  Q
    |||||||| |||||||||||||||||||||| |||||    ||| |||||||||||||||    
T  32870341 aacataatattatcatagtctctcaacactatatttt----acaacatcttccaccacca 32870396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 29006385 - 29006418
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaa 274  Q
    |||||||||||||||||| |||||||||||||||    
T  29006385 catgggaaagttagtttttaaccattagattaaa 29006418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 46757481 - 46757537
Alignment:
Q  261 accattagattaaatagggaacataattttatcatagtctctcaacactaaattttt 317  Q
    |||||||||| || ||| ||||||||||||||||||| | |||||||| || |||||    
T  46757481 accattagataaagtagagaacataattttatcatagacactcaacaccaatttttt 46757537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 241 - 365
Target Start/End: Original strand, 42654873 - 42654996
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacac-taaatttttgtcacatcatcttccaccacca 339  Q
    |||||||||||||||||| ||||||| |||||| ||||||||| ||||||| ||| |||||||||||| ||  ||||| |||||| ||||||||||||||    
T  42654873 catgggaaagttagtttttaaccattggattaagtagggaacaaaattttaccatggtctctcaacacttatttttttttcacattatcttccaccacca 42654972  T
Q  340 cccttctcccctacctttgtgtgttt 365  Q
    ||||  ||||||||||||||||||||    
T  42654973 ccct--tcccctacctttgtgtgttt 42654996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 8040434 - 8040390
Alignment:
Q  262 ccattagattaaatagggaacataattttatcatagtctctcaac 306  Q
    |||||||||||||||||||||||| || ||||||| |||||||||    
T  8040434 ccattagattaaatagggaacatatttctatcatactctctcaac 8040390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 8320912 - 8320945
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaa 274  Q
    |||||||||||||||||| |||||||||||||||    
T  8320912 catgggaaagttagtttttaaccattagattaaa 8320945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 24027701 - 24027668
Alignment:
Q  237 ccatcatgggaaagttagttttgaaccattagat 270  Q
    |||||||||||||||||||||| |||||||||||    
T  24027701 ccatcatgggaaagttagtttttaaccattagat 24027668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 246 - 341
Target Start/End: Complemental strand, 29921541 - 29921446
Alignment:
Q  246 gaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccacc 341  Q
    ||||||||||||| |||||||| ||||||||||| ||| |||||||| || ||||||||||| |||||||||   |||||||||||||||||||||    
T  29921541 gaaagttagtttttaaccattaaattaaatagggtacacaattttataatggtctctcaacattaaatttttccgacatcatcttccaccaccacc 29921446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 241 - 345
Target Start/End: Complemental strand, 5006318 - 5006214
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccac 340  Q
    |||| |||||||| |||| || ||||  ||||| ||||||||| ||||||| ||| ||||||||||||| |||||||  |||||||||||||||||||||    
T  5006318 catgagaaagttactttttaatcattgaattaagtagggaacaaaattttaccattgtctctcaacacttaattttttccacatcatcttccaccaccac 5006219  T
Q  341 ccttc 345  Q
    |||||    
T  5006218 ccttc 5006214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 345
Target Start/End: Original strand, 40992260 - 40992365
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtc-acatcatcttccaccacca 339  Q
    |||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| |||| | |||||   |||||| ||  ||||||||||||||||||    
T  40992260 catgggaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttttaacacactatttttttcttcatcatcttccaccacca 40992359  T
Q  340 cccttc 345  Q
     |||||    
T  40992360 tccttc 40992365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 14487964 - 14488037
Alignment:
Q  237 ccatcatgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacacta 310  Q
    |||| |||||||||||| |||| |||||||||||| | || |||||| | ||||||||||||||||| ||||||    
T  14487964 ccattatgggaaagttactttttaaccattagattgattatggaacacacttttatcatagtctctctacacta 14488037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 345
Target Start/End: Original strand, 16426591 - 16426696
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtc-acatcatcttccaccacca 339  Q
    ||||| ||||||| |||| ||||||| |||||| ||||||| | ||||||||||| |||| |||||||   |||||| ||  ||||||||||||||||||    
T  16426591 catggaaaagttaatttttaaccatttgattaagtagggaatacaattttatcatggtctttcaacacactatttttttcttcatcatcttccaccacca 16426690  T
Q  340 cccttc 345  Q
     |||||    
T  16426691 tccttc 16426696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 36476737 - 36476681
Alignment:
Q  261 accattagattaaatagggaacataattttatcatagtctctcaacactaaattttt 317  Q
    |||||||||||||||| |||||| |||||||||||||||||| | ||||| ||||||    
T  36476737 accattagattaaataaggaacacaattttatcatagtctcttatcactagattttt 36476681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 4976514 - 4976440
Alignment:
Q  242 atgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaattttt 317  Q
    |||||||||||| |||| ||||||||||| |||||| ||||||| ||||| ||||| | |||||||| ||||||||    
T  4976514 atgggaaagttaatttt-aaccattagataaaatagagaacatacttttaccatagacactcaacaccaaattttt 4976440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 4994421 - 4994347
Alignment:
Q  242 atgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaattttt 317  Q
    |||||||||||| |||| ||||||||||| |||||| ||||||| ||||| ||||| | |||||||| ||||||||    
T  4994421 atgggaaagttaatttt-aaccattagataaaatagagaacatacttttaccatagacactcaacaccaaattttt 4994347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 333
Target Start/End: Original strand, 23875275 - 23875369
Alignment:
Q  238 catcatgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttcca 333  Q
    |||||||||||||||  || ||| ||||||||| |  || |||||||||| |||||||||||| ||||||||| ||| || | |||| ||||||||    
T  23875275 catcatgggaaagttttttatga-ccattagatcatgtaaggaacataatattatcatagtctttcaacactagattatttttacattatcttcca 23875369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 37996598 - 37996560
Alignment:
Q  237 ccatcatgggaaagttagttttgaaccattagattaaat 275  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  37996598 ccatcatgggaaagttagtttttaaccattagatcaaat 37996560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 6610054 - 6610021
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaa 274  Q
    |||||||||||||||||| |||||||||||||||    
T  6610054 catgggaaagttagtttttaaccattagattaaa 6610021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 7994088 - 7994121
Alignment:
Q  237 ccatcatgggaaagttagttttgaaccattagat 270  Q
    |||||||||||||||||||||| |||||||||||    
T  7994088 ccatcatgggaaagttagtttttaaccattagat 7994121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 15562051 - 15562018
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaa 274  Q
    |||||||||||||||||| |||||||||||||||    
T  15562051 catgggaaagttagtttttaaccattagattaaa 15562018  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 4479692 - 4479640
Alignment:
Q  262 ccattagattaaatagggaacataattttatcatagtctctcaacactaaatt 314  Q
    ||||||||||||||  |||||||| | |||||||| |||||| ||||||||||    
T  4479692 ccattagattaaatgaggaacatattcttatcatactctctccacactaaatt 4479640  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 14573319 - 14573367
Alignment:
Q  262 ccattagattaaatagggaacataattttatcatagtctctcaacacta 310  Q
    ||||||||||||||  |||| ||| |||||||||| |||||||||||||    
T  14573319 ccattagattaaatgaggaatatatttttatcatactctctcaacacta 14573367  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 38834445 - 38834489
Alignment:
Q  262 ccattagattaaatagggaacataattttatcatagtctctcaac 306  Q
    ||||||||||||||  |||||||| |||||||||| |||||||||    
T  38834445 ccattagattaaatgaggaacatatttttatcatactctctcaac 38834489  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 42369701 - 42369753
Alignment:
Q  262 ccattagattaaatagggaacataattttatcatagtctctcaacactaaatt 314  Q
    ||||||||| || ||| ||||||||||||||||||| | |||||||| |||||    
T  42369701 ccattagataaagtagagaacataattttatcatagacactcaacaccaaatt 42369753  T

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Target: scaffold0155 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 345
Target Start/End: Original strand, 17377 - 17482
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtc-acatcatcttccaccacca 339  Q
    |||||||||||||||||| ||||||| ||| |||||||||||| ||||||||||| |||| |||||||   |||||| ||  ||||||||||||||||||    
T  17377 catgggaaagttagtttttaaccatttgatcaaatagggaacacaattttatcatggtctttcaacacactatttttttcttcatcatcttccaccacca 17476  T
Q  340 cccttc 345  Q
     |||||    
T  17477 tccttc 17482  T

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Target: scaffold0069 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 251 - 345
Target Start/End: Complemental strand, 1938 - 1844
Alignment:
Q  251 ttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacactaaatttttgtcacatcatcttccaccaccacccttc 345  Q
    ||||||||  || |||| ||||||||| |||||  || |||| |||||||||||||||||||| |||  ||||||||||||||||||||||||||    
T  1938 ttagtttttgactattaaattaaatagagaacacgatgttattatagtctctcaacactaaatatttcccacatcatcttccaccaccacccttc 1844  T

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Target: scaffold0071 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 11928 - 11865
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaa 305  Q
    ||||||||||||| | |||| |||||||||||| ||| ||||||| |||||||||||||| ||||    
T  11928 catgggaaagttaatcttga-ccattagattaagtagagaacatatttttatcatagtctttcaa 11865  T

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Target: scaffold0189 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 12869 - 12803
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaacataattttatcatagtctctcaacac 308  Q
    ||||||||||||| |||||| ||||||||| || ||| ||||||| ||||||||||| | ||||||||    
T  12869 catgggaaagttaattttga-ccattagataaactagagaacatacttttatcatagacactcaacac 12803  T

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Target: scaffold0129 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 42524 - 42583
Alignment:
Q  241 catgggaaagttagttttgaaccattagattaaatagggaaca-taattttatcatagtct 300  Q
    |||||||||||| | ||| ||||||||||||||||| ||||||  ||||||||||||||||    
T  42524 catgggaaagttgggtttaaaccattagattaaata-ggaacaccaattttatcatagtct 42583  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 27279 - 27331
Alignment:
Q  262 ccattagattaaatagggaacataattttatcatagtctctcaacactaaatt 314  Q
    ||||||||||||||  |||||| | | |||||||| |||||||||||||||||    
T  27279 ccattagattaaatgaggaacacattcttatcatactctctcaacactaaatt 27331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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