View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0309_low_13 (Length: 306)
Name: NF0309_low_13
Description: NF0309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0309_low_13 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 51807791 - 51807535
Alignment:
| Q |
14 |
gaaatggaaaatggttttcgtatattataccatatatctaggaaacacatctaagtcttacaagggtactcaccgtgttcttggactctttgtgagagac |
113 |
Q |
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| T |
51807791 |
gaaatggaaaatggttttcgtatattataccatatatctaggaaacacatctaagtcttacaagggtactcaccgtgttcttggactctttgtgagagac |
51807692 |
T |
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| Q |
114 |
tatcagccttcctagcaagtcttttcttgttcgaatttgttaaacctgaaacaataaagcactctatatatgttggtaaaaccatcaatacttagcgaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
51807691 |
tatcagccttcctagcaagtcttttcttgttcgaatttgttaaacctgaaacaataaagcactc----tatgttggtaaaaccatcaatacttagcgaaa |
51807596 |
T |
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| Q |
214 |
tttgatattcatgattcgtctgtcgtcaaggaaaagaaagtcttacttttgctttgatgcttgg |
277 |
Q |
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| T |
51807595 |
tttgatattcatgattcatct---gtcaaggaaaagaaagtcttacttttgctttgatgcttgg |
51807535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 67 - 277
Target Start/End: Complemental strand, 51780046 - 51779832
Alignment:
| Q |
67 |
agtcttacaagggtactcac----cgtgttcttggactctttgtgagagactatcagccttcctagc----aagtcttttcttgttcgaatttgttaaac |
158 |
Q |
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| T |
51780046 |
agtcttacaagggtactcactcaccatgttcttggactttttgtgagagactatcagccttcctagctagcaagccttttcttgtttgaatttgttaaac |
51779947 |
T |
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| Q |
159 |
ctgaaacaataaagcactctatatatgttggtaaaaccatcaatacttagcgaaatttgatattcatgattcgtctgtcgtcaaggaaaagaaagtctta |
258 |
Q |
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| T |
51779946 |
ctgaaacaataaagcactctatat----tggtaaaacattcaatacctagcgaaattagatgttcatgattcgtctgtcgtcaaggaaaagaaagtctta |
51779851 |
T |
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| Q |
259 |
cttttgctttgatgcttgg |
277 |
Q |
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| T |
51779850 |
cttttgctttgatgtttgg |
51779832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 54 - 277
Target Start/End: Complemental strand, 51772170 - 51771959
Alignment:
| Q |
54 |
ggaaacacatctaagtcttacaagggtactcaccgtgttcttggactctttgtgagagactatcagccttcctagcaagtcttttcttgttcgaatttgt |
153 |
Q |
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| T |
51772170 |
ggaaacacatctcagtcttacaagggtactcaccatgttcttggactttttgtgagagactatcagcctttctagcaagccttttcttgttcgaatttgt |
51772071 |
T |
|
| Q |
154 |
taaacctgaaacaat--aaagcactctatatatgttggtaaaaccatcaatacttagcgaaatttgatattcatgattcgtctgtcgtcaaggaaaagaa |
251 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||| | | ||| |||||||||||||| || ||||||| ||| |
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| T |
51772070 |
taaacctgaaacaataaaaagcactctata----ttggtaaaaccatcaatac-------agatcgattttcatgattcgtct---gtaaaggaaatgaa |
51771985 |
T |
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| Q |
252 |
agtcttacttttgctttgatgcttgg |
277 |
Q |
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||||||||||||||||||||| |||| |
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| T |
51771984 |
agtcttacttttgctttgatgtttgg |
51771959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 51803853 - 51803793
Alignment:
| Q |
66 |
aagtcttacaagggtactcaccgtgttcttggactctttgtgagagactatcagccttcct |
126 |
Q |
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| T |
51803853 |
aagtcttactagggtactcaccatgttcttgaactctttgtgagagactatcggccttcct |
51803793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 67 - 277
Target Start/End: Complemental strand, 6688 - 6474
Alignment:
| Q |
67 |
agtcttacaagggtactcac----cgtgttcttggactctttgtgagagactatcagccttcctagc----aagtcttttcttgttcgaatttgttaaac |
158 |
Q |
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|||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| |
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| T |
6688 |
agtcttacaagggtactcactcaccatgttcttggactttttgtgagagactatcagccttcctagctagcaagccttttcttgtttgaatttgttaaac |
6589 |
T |
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| Q |
159 |
ctgaaacaataaagcactctatatatgttggtaaaaccatcaatacttagcgaaatttgatattcatgattcgtctgtcgtcaaggaaaagaaagtctta |
258 |
Q |
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| T |
6588 |
ctgaaacaataaagcactctatat----tggtaaaacattcaatacctagcgaaatttgatattcatgattcgtctgtcgtcaaggaaaagaaagtctta |
6493 |
T |
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| Q |
259 |
cttttgctttgatgcttgg |
277 |
Q |
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|||||||||||||| |||| |
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| T |
6492 |
cttttgctttgatgtttgg |
6474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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