View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0309_low_16 (Length: 278)

Name: NF0309_low_16
Description: NF0309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0309_low_16
NF0309_low_16
[»] chr3 (8 HSPs)
chr3 (80-229)||(9347613-9347759)
chr3 (55-147)||(9369315-9369411)
chr3 (150-225)||(9431625-9431700)
chr3 (150-225)||(9410616-9410691)
chr3 (150-225)||(9419312-9419387)
chr3 (164-207)||(9368872-9368915)
chr3 (150-183)||(9400826-9400859)
chr3 (150-183)||(9411896-9411929)


Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 80 - 229
Target Start/End: Complemental strand, 9347759 - 9347613
Alignment:
Q  80 gtttggataaactttttgactataacttgcaatatattttctttgaaatgttattggctatgactaaacttatttgttatgaacttatgatccattagag 179  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9347759 gtttggattaactttttgactataacttgcaatatattttctttgaaatgttattggctatgactaaacttatttgttatgaacttattatccattagag 9347660  T
Q  180 atacatttatcagtcataatctgatatatttgtcttttggtctaacaaga 229  Q
    ||||| ||   |||||||||||||||||||| ||||||||||||||||||    
T  9347659 atacactt---agtcataatctgatatatttttcttttggtctaacaaga 9347613  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 9369411 - 9369315
Alignment:
Q  55 cattagtgtgcttaggtttatgttcgtttggataaactttttgactataacttgcaatatattttctttga-----aatgttattggctatgactaaa 147  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||     ||||||||||||||||||||||    
T  9369411 cattagtgtgcttag-tttatgttcgtttggataaactttttgactataacttgcaatgtattttctttgaaatgaaatgttattggctatgactaaa 9369315  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 9431700 - 9431625
Alignment:
Q  150 tatttgttatgaacttatgatccattagagatacatttatcagtcataatctgatatatttgtcttttggtctaac 225  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||    
T  9431700 tatttgttatgaacttatgatccattagagatacacttatcagttataatctgatatattcgtcttttggtctaac 9431625  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 9410691 - 9410616
Alignment:
Q  150 tatttgttatgaacttatgatccattagagatacatttatcagtcataatctgatatatttgtcttttggtctaac 225  Q
    ||||||||||||||||||||||| ||||||||||  |||||||| |||||||| ||||| ||||||||||||||||    
T  9410691 tatttgttatgaacttatgatcctttagagatactgttatcagttataatctgctatatgtgtcttttggtctaac 9410616  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 9419387 - 9419312
Alignment:
Q  150 tatttgttatgaacttatgatccattagagatacatttatcagtcataatctgatatatttgtcttttggtctaac 225  Q
    |||||||||||||||||||||| |||||||||||  ||||| || ||||||||| |||| |||| |||||||||||    
T  9419387 tatttgttatgaacttatgatcgattagagatacccttatctgttataatctgaaatatgtgtcgtttggtctaac 9419312  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 9368915 - 9368872
Alignment:
Q  164 ttatgatccattagagatacatttatcagtcataatctgatata 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  9368915 ttatgatccattagagatacacttatcagtcataatctgatata 9368872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 183
Target Start/End: Complemental strand, 9400859 - 9400826
Alignment:
Q  150 tatttgttatgaacttatgatccattagagatac 183  Q
    ||||||||||||||||||||||||||||||||||    
T  9400859 tatttgttatgaacttatgatccattagagatac 9400826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 183
Target Start/End: Complemental strand, 9411929 - 9411896
Alignment:
Q  150 tatttgttatgaacttatgatccattagagatac 183  Q
    ||||||||||||||||||||||||||||||||||    
T  9411929 tatttgttatgaacttatgatccattagagatac 9411896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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