View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0309_low_17 (Length: 275)
Name: NF0309_low_17
Description: NF0309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0309_low_17 |
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| [»] scaffold0115 (1 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 30 - 264
Target Start/End: Complemental strand, 21087786 - 21087552
Alignment:
| Q |
30 |
cctttaaccaaagatctttaagcacaataactttatagtcattagttttaggatcaaaaccaaaactagcataatcagtgagagaataaatgccatttga |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21087786 |
cctttaaccaaagatctttaagcacaataactttatagtcattagttttaggatcaaaaccaaaactagcataatcagtgagagaataaatgccatttga |
21087687 |
T |
|
| Q |
130 |
atcagttaaatgggattcaggtaaagccttgaattgttgcaaagaagcattcatcaagacatttggatttccttgaagtaaatatataccattgcatggt |
229 |
Q |
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||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
21087686 |
atctgttaaatgggattcaggtaaagccttgaactgttgtaaagaagcattcatcaagacatttggatttccttgaagtaagtatataccattgcatggt |
21087587 |
T |
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| Q |
230 |
cccataatttcagaccaatatttatgttcagaatt |
264 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
21087586 |
cccataatttcagaccaatatttatgttcagaatt |
21087552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 30 - 266
Target Start/End: Complemental strand, 16249 - 16013
Alignment:
| Q |
30 |
cctttaaccaaagatctttaagcacaataactttatagtcattagttttaggatcaaaaccaaaactagcataatcagtgagagaataaatgccatttga |
129 |
Q |
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|||||||||||| |||||| |||| || |||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
16249 |
cctttaaccaaatatctttgagcataacaactttatagtcattacttttgggatcaaaaccaaaactagcataatcagtaagagaataaataccatttga |
16150 |
T |
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| Q |
130 |
atcagttaaatgggattcaggtaaagccttgaattgttgcaaagaagcattcatcaagacatttggatttccttgaagtaaatatataccattgcatggt |
229 |
Q |
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||| || ||||||||||||||||||| |||||| ||| | ||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||| |
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| T |
16149 |
atctgtcaaatgggattcaggtaaagacttgaactgtcttagagaagggttcatcaagacatttggatttccttgaaggaagtatatgccattgcatggt |
16050 |
T |
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| Q |
230 |
cccataatttcagaccaatatttatgttcagaattat |
266 |
Q |
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| T |
16049 |
cccatgatttcagaccaatatttgtgatcagaattat |
16013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 252
Target Start/End: Complemental strand, 55732 - 55530
Alignment:
| Q |
50 |
agcacaataactttatagtcattagttttaggatcaaaaccaaaactagcataatcagtgagagaataaatgccatttgaatcagttaaatgggattcag |
149 |
Q |
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||||||| ||||||||||||||||||||| || || | ||||| | |||| ||||||||||||||||| || |||| |||| || ||||| ||||||| |
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| T |
55732 |
agcacaacaactttatagtcattagttttcgggtcgagcccaaatccagcaaaatcagtgagagaataattgagatttaaatctgtcaaatgagattcag |
55633 |
T |
|
| Q |
150 |
gtaaagccttgaattgttgcaaagaagcattcatcaagacatttggatttccttgaagtaaatatataccattgcatggtcccataatttcagaccaata |
249 |
Q |
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| ||||||||||| ||| |||||||| ||||||| || |||||||||||||||||| || || || ||||| ||||| ||||| ||||||| |||||| |
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| T |
55632 |
gcaaagccttgaactgtctcaaagaagggttcatcatgagatttggatttccttgaagaaagtaaatgccattacatggacccatgatttcagtccaata |
55533 |
T |
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| Q |
250 |
ttt |
252 |
Q |
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||| |
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| T |
55532 |
ttt |
55530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 26813407 - 26813346
Alignment:
| Q |
35 |
aaccaaagatctttaagcacaataactttatagtcattagtttt-aggatcaaaaccaaaac |
95 |
Q |
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||||||| |||| ||||||||| || |||||||||||||||||| || ||||||||||||| |
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| T |
26813407 |
aaccaaatatctctaagcacaacaagtttatagtcattagttttgggggtcaaaaccaaaac |
26813346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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