View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0309_low_18 (Length: 266)
Name: NF0309_low_18
Description: NF0309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0309_low_18 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 51807776 - 51808016
Alignment:
| Q |
1 |
aaccattttccatttctgtgtagtatctatatcagcttaactcctcttgcagttgctagttgagttgcgcgtatctaattctatttgcataactctgaaa |
100 |
Q |
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| T |
51807776 |
aaccattttccatttctgtgtagtatctatatcagctttactcctcttgc------tagttgagttgcgcatatctaattctatttgcataactctgaaa |
51807869 |
T |
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| Q |
101 |
aatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51807870 |
aatttcagtgagagttggagcaaacatatctaaaacaataaagagaactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgttt |
51807969 |
T |
|
| Q |
201 |
acgcaatattttagtgtgacagaaggagagaggctatcaaaagtttc |
247 |
Q |
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| T |
51807970 |
acgcaatattttagtgtgacagaaggagagaggctatcaaaagtttc |
51808016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 71 - 251
Target Start/End: Original strand, 51803887 - 51804067
Alignment:
| Q |
71 |
gtatctaattctatttgcataactctgaaaaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaatt |
170 |
Q |
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| T |
51803887 |
gtatctaattctctttatataactctgaaaaatttcagtgagatcgggagcaaacatatctaaaacaataaagaggacgttgaacttaggggctcaaatt |
51803986 |
T |
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| Q |
171 |
cttcaaatgggtggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcgcag |
251 |
Q |
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| T |
51803987 |
cttcaaatgggtggagtggagaaaatgtttaggcagtattttagtgtgagagaaggagagaggctatcaaaagtttcgcag |
51804067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 219
Target Start/End: Original strand, 51772294 - 51772413
Alignment:
| Q |
100 |
aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt |
199 |
Q |
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|||||||||| ||| || |||||||||| ||| ||||||| ||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
51772294 |
aaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtt |
51772393 |
T |
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| Q |
200 |
tacgcaatattttagtgtga |
219 |
Q |
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| T |
51772394 |
tatgcggtattttagtgtga |
51772413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 100 - 219
Target Start/End: Original strand, 51780160 - 51780279
Alignment:
| Q |
100 |
aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt |
199 |
Q |
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|||||||| | ||| | ||||||||||| ||| ||||||||| ||||| ||||||||||||||| |||||||| || ||||||||||||| ||| | || |
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| T |
51780160 |
aaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctttaagtgggtggagtggataaattttt |
51780259 |
T |
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| Q |
200 |
tacgcaatattttagtgtga |
219 |
Q |
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|| ||| ||||||||||||| |
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| T |
51780260 |
tatgcactattttagtgtga |
51780279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 201
Target Start/End: Original strand, 51761302 - 51761406
Alignment:
| Q |
98 |
aaaaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagctta-ggggctcaaattcttcaaatgggtggagtggagaaagt |
196 |
Q |
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|||||||||||||||||| |||| ||||||||| ||||||||||||||| || || | ||||||| ||||||| || |||||| |||||||||| | |
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| T |
51761302 |
aaaaatttcagtgagagtgggagaaaacatatcagaaacaataaagaggaagttaagtacagggggctcgaattcttgaagtgggtgaagtggagaaaat |
51761401 |
T |
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| Q |
197 |
gttta |
201 |
Q |
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||||| |
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| T |
51761402 |
gttta |
51761406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 100 - 219
Target Start/End: Original strand, 6802 - 6921
Alignment:
| Q |
100 |
aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt |
199 |
Q |
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|||||||| | ||| | ||||||||||| ||| ||||||||| ||||| ||||||||||||||| |||||||| || ||||||||||||| ||| | || |
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| T |
6802 |
aaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctttaagtgggtggagtggataaattttt |
6901 |
T |
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| Q |
200 |
tacgcaatattttagtgtga |
219 |
Q |
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| T |
6902 |
tatgcactattttagtgtga |
6921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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