View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0309_low_2 (Length: 569)
Name: NF0309_low_2
Description: NF0309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0309_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 38 - 557
Target Start/End: Complemental strand, 10296382 - 10295867
Alignment:
| Q |
38 |
attctaaagcacagacatagaactgaataaccagaaaataattaaatgagaaaacagtaaccaaatgtagttttcttatgcgaagaggtaaacatacaag |
137 |
Q |
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| T |
10296382 |
attctaaagcacagacatagaactgaataacaagaaaataattaaatgagaaaacagtaaccaaatgtagttttcttatgcgaagaggtaaacatacaag |
10296283 |
T |
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| Q |
138 |
gtttatccaacttacagtatttcctgaagatgctaagaagtagtgatcaagataaggacagatagcaagtggaattccattccatatagttgcacaaacc |
237 |
Q |
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| T |
10296282 |
gtttatccaacttacagtatttcctgaagatgctaagaagtagtgatcaagataaggacagatagcaagtggaattccattccatatagttgcacaaacc |
10296183 |
T |
|
| Q |
238 |
actcagaactgccacgtttcatttttattaccaagtttgatgccatccaaacta---ttatcagggatactgctcactgctgaggctacaacttgatagt |
334 |
Q |
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| T |
10296182 |
actcagaactgccacgtttcatttttattaccaagtttgatgccatccaaactattgttatcagggat-------actgctgaggctacaacttgatagt |
10296090 |
T |
|
| Q |
335 |
ggttcgagataatgtacaactaattcgtggaaaggtgaagttttttgagataatgatgctgacttcgaagaaagactagttccaaccacaatcaccagct |
434 |
Q |
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| T |
10296089 |
ggttcaagataatgtacaactaattcgtggaaaggtgaagttttttgagataatgatgctgacttcgaagaaagactagttccaaccacaatcaccagct |
10295990 |
T |
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| Q |
435 |
tacttccaaacttgactagttccattgattttacttctccatgttcaagttcaaaagacgccagtactgacccacttagtggatccacacaacatatgtc |
534 |
Q |
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| T |
10295989 |
tacttccaaacttgactagttccattgattttacttctccatgttcaagttcaaaagacgccagtactgacccacttagtggatccacacaacatatgtc |
10295890 |
T |
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| Q |
535 |
agacgaatatgtaccatgattca |
557 |
Q |
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| T |
10295889 |
agacgaatatgtaccatgattca |
10295867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 407 - 550
Target Start/End: Original strand, 43797011 - 43797157
Alignment:
| Q |
407 |
agactagttccaaccacaatcaccagcttacttccaaacttgactagttccattgattttact---tctccatgttcaagttcaaaagacgccagtactg |
503 |
Q |
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||||||||||||||||||| |||| ||| |||||||| | | | || |||||| ||| || || |||||| |||| ||| |||||||| ||||||| |
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| T |
43797011 |
agactagttccaaccacaagcacctgctcacttccaaccctaattaattccatggatgttgctgtttctccaagttctagtctaaaagacgatagtactg |
43797110 |
T |
|
| Q |
504 |
acccacttagtggatccacacaacatatgtcagacgaatatgtacca |
550 |
Q |
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| T |
43797111 |
acccgcttaggggatccacacaacatatgtcagacaaacatgtacca |
43797157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 297
Target Start/End: Original strand, 43795595 - 43795724
Alignment:
| Q |
165 |
agatgctaagaagtagtgatcaagataaggacagatagcaagtggaattccattccatatagttgcacaaaccactcagaactgccacgtttcattttta |
264 |
Q |
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|||||| || || ||| ||||||||||||||||||| || || |||||| | |||| |||||||| || ||| || ||||||||| ||||||||| | |
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| T |
43795595 |
agatgccaaaaaatagcgatcaagataaggacagatcgcttgtacaattccctgccatgtagttgcagaagccaatcggaactgccaaatttcattttca |
43795694 |
T |
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| Q |
265 |
ttaccaagtttgatgccatccaaactattatca |
297 |
Q |
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| T |
43795695 |
t---caagtttgatgccatcaaagctattatca |
43795724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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