View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0309_low_3 (Length: 548)

Name: NF0309_low_3
Description: NF0309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0309_low_3
NF0309_low_3
[»] chr6 (10 HSPs)
chr6 (5-454)||(31564316-31564775)
chr6 (195-359)||(33416366-33416536)
chr6 (14-158)||(33385526-33385670)
chr6 (14-158)||(33259815-33259959)
chr6 (316-445)||(33385707-33385837)
chr6 (29-135)||(24631864-24631970)
chr6 (371-430)||(33281320-33281376)
chr6 (388-442)||(33416538-33416592)
chr6 (371-430)||(33301947-33302003)
chr6 (52-127)||(281808-281881)
[»] chr5 (4 HSPs)
chr5 (196-350)||(30653203-30653360)
chr5 (23-88)||(30653373-30653438)
chr5 (77-128)||(11457158-11457209)
chr5 (5-69)||(11684404-11684468)
[»] scaffold0428 (2 HSPs)
scaffold0428 (14-158)||(3903-4047)
scaffold0428 (371-430)||(12876-12932)
[»] chr2 (4 HSPs)
chr2 (313-442)||(17443374-17443503)
chr2 (93-158)||(17443537-17443602)
chr2 (53-130)||(14299588-14299663)
chr2 (112-164)||(43199930-43199982)
[»] chr8 (3 HSPs)
chr8 (52-130)||(13000381-13000457)
chr8 (52-130)||(30191098-30191174)
chr8 (24-73)||(30389108-30389157)
[»] chr3 (3 HSPs)
chr3 (52-128)||(43115093-43115167)
chr3 (52-130)||(37273171-37273247)
chr3 (55-151)||(24624250-24624344)
[»] chr7 (2 HSPs)
chr7 (15-128)||(3468614-3468725)
chr7 (52-127)||(39345508-39345581)
[»] chr1 (3 HSPs)
chr1 (79-130)||(15581316-15581367)
chr1 (55-130)||(28837002-28837075)
chr1 (24-68)||(30014095-30014139)
[»] scaffold0311 (1 HSPs)
scaffold0311 (52-127)||(10577-10650)
[»] chr4 (1 HSPs)
chr4 (53-128)||(9843212-9843285)


Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 5 - 454
Target Start/End: Complemental strand, 31564775 - 31564316
Alignment:
Q  5 actgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaa 104  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31564775 actgttttcctacaagtgattttcataagcttttctagacaacatatggaaataagctgaaaacaacttttgtggacatgtcattagttgtttccattaa 31564676  T
Q  105 ctcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatcaatccacaagaggcaaaacaatatgagaagatgggcaaaatggaag 204  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31564675 ctcttcgaaacagtctcacaagtgctaatatgagtgtataagttcaaatatatcaatccacaagaggcaaaacaatatgaaaagatgggcaaaatggaag 31564576  T
Q  205 tataattcattttttctcttttacat------gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaa 298  Q
    ||||||| ||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564575 tataattaattttttctcttttacatttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaa 31564476  T
Q  299 attagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataag 394  Q
    |||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564475 attagaatagaaacattaagcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataag 31564376  T
Q  395 ttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgtactaccacaggt 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564375 ttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgtactaccacaggt 31564316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 195 - 359
Target Start/End: Original strand, 33416366 - 33416536
Alignment:
Q  195 aaaatggaagtataat--tcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgt 292  Q
    |||||||||||||| |  || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |    
T  33416366 aaaatggaagtatattcatcttttcttctcttttacatgtaaaaactgaaatacatgtataaattcaaatctgtccaacatatttacttctatttgatat 33416465  T
Q  293 agaaaaattagaatagaaa----cagcaaataagatgaaattgaaaccattactcgagcctttgtctgaag 359  Q
    |||||||| ||||| ||||     ||||||||||||||||| |||||| |||||||||||||  |||||||    
T  33416466 agaaaaatgagaattgaaatatgaagcaaataagatgaaatggaaacctttactcgagccttcatctgaag 33416536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 33385526 - 33385670
Alignment:
Q  14 ctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaa 113  Q
    |||||||| |||||||||||||||||||||||   || ||||| |||||||||||||||||| ||||||||||||  | ||||||||| |||||||| ||    
T  33385526 ctataagctattttcataagcttttctagacagtttatggaaaaaagctgaaaacaacttttatggacatgtcatgagctgtttccataaactcttccaa 33385625  T
Q  114 acagtctcacaagtgctaatatgactgtataagttcaaatacatc 158  Q
    ||||| ||||||||||| |||| | |  |||||||||||| ||||    
T  33385626 acagtttcacaagtgcttatatcagtagataagttcaaatgcatc 33385670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 33259815 - 33259959
Alignment:
Q  14 ctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaa 113  Q
    |||||||| ||||||||||||||||||| |||  ||| | |||   |||||||||| ||||| ||||||||||||| |  |||||||| |||||||| ||    
T  33259815 ctataagctattttcataagcttttctatacagtatatgtaaaatggctgaaaacagcttttatggacatgtcattagccgtttccataaactcttccaa 33259914  T
Q  114 acagtctcacaagtgctaatatgactgtataagttcaaatacatc 158  Q
    ||||| |  |||||||| |||| | | ||||||||||||||||||    
T  33259915 acagtttggcaagtgcttatatcaatatataagttcaaatacatc 33259959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 316 - 445
Target Start/End: Original strand, 33385707 - 33385837
Alignment:
Q  316 aaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttg-tctcggatgc 414  Q
    |||||||||||||||| |||| || ||| ||||||  ||||| |  ||||| ||||||||||||||||| ||||||| | ||||||||| | |   ||||    
T  33385707 aaataagatgaaattgcaacctttgctcaagccttcatctgacgctgtaattccggtttgtccattagagttagatacgctgttgtttgttttttaatgc 33385806  T
Q  415 aattgcaacttcttcatcttcaacttgtact 445  Q
    |||||||||||||||| ||||||||||||||    
T  33385807 aattgcaacttcttcaccttcaacttgtact 33385837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 24631970 - 24631864
Alignment:
Q  29 ataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 128  Q
    ||||||||||||| ||| | |  ||||||||||| |||||| ||||| ||||||| ||||  ||||||||||| |||||||| ||| ||| |||||||||    
T  24631970 ataagcttttctaaacagcttttggaaataagctaaaaacagcttttatggacatatcatgagttgtttccataaactcttccaaatagtttcacaagtg 24631871  T
Q  129 ctaatat 135  Q
    || ||||    
T  24631870 cttatat 24631864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 430
Target Start/End: Original strand, 33281320 - 33281376
Alignment:
Q  371 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 430  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  33281320 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 33281376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 442
Target Start/End: Original strand, 33416538 - 33416592
Alignment:
Q  388 agataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgt 442  Q
    |||||||||| ||||||| || ||||||||||||||  |||||||||||||||||    
T  33416538 agataagttgctgtttgtttcagatgcaattgcaaccgcttcatcttcaacttgt 33416592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 371 - 430
Target Start/End: Original strand, 33301947 - 33302003
Alignment:
Q  371 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 430  Q
    ||||||||||||||||||||||   || ||||||||||||||||||| ||||| ||||||    
T  33301947 gtttgtccattagaattagata---tgatgtttgtctcggatgcaatagcaacctcttca 33302003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 281881 - 281808
Alignment:
Q  52 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 127  Q
    |||||||||||||||||||||| |   ||||||||||  |||| |||||||| |||| | ||||||||||||||||    
T  281881 ggaaataagctgaaaacaacttata--gacatgtcataagttgcttccattagctctcccaaacagtctcacaagt 281808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 196 - 350
Target Start/End: Complemental strand, 30653360 - 30653203
Alignment:
Q  196 aaatggaagtataattcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtaga 295  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||| ||||||||||||||||||| |||||| | |||||||| ||    
T  30653360 aaatggaagtataatttattttttctcttttacatgtaaaaaccgaaagacatgtataagttcaaatctgtctaacataattactt-tgttagatgttga 30653262  T
Q  296 aaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctt 350  Q
    ||||||||||||||||||    |||||||||||||||||  |||| |||||||||||||    
T  30653261 aaaattagaatagaaacatgacgcaaataagatgaaattttaacctttactcgagcctt 30653203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 30653438 - 30653373
Alignment:
Q  23 attttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcat 88  Q
    ||||||||||||||||||||||| | || |||||||||||||||||| ||||| || |||||||||    
T  30653438 attttcataagcttttctagacagcttatggaaataagctgaaaacagcttttatgaacatgtcat 30653373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 11457158 - 11457209
Alignment:
Q  77 tggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 128  Q
    ||||||||||||  ||||||||||| | |||||| |||||||||||||||||    
T  11457158 tggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagtg 11457209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 11684404 - 11684468
Alignment:
Q  5 actgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaaca 69  Q
    ||||||||| ||||||| ||||||||||||| | || || | | |||||||||||| ||||||||    
T  11684404 actgttttcatataagctattttcataagctatgctggagagcttacggaaataagttgaaaaca 11684468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 3903 - 4047
Alignment:
Q  14 ctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaa 113  Q
    |||||||| |||||||||||||||||||||||  ||| | |||   |||||||||| ||||| ||||||||||||  |  |||||||| |||||||| ||    
T  3903 ctataagctattttcataagcttttctagacagtatatgtaaaatggctgaaaacagcttttatggacatgtcatgagccgtttccataaactcttccaa 4002  T
Q  114 acagtctcacaagtgctaatatgactgtataagttcaaatacatc 158  Q
    ||||||||||||||||| |||| | | ||||||||||||||||||    
T  4003 acagtctcacaagtgcttatatcaatatataagttcaaatacatc 4047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 430
Target Start/End: Complemental strand, 12932 - 12876
Alignment:
Q  371 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 430  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  12932 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 12876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 442
Target Start/End: Complemental strand, 17443503 - 17443374
Alignment:
Q  313 agcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggat 412  Q
    ||||||||||||||||||| |||| ||  || ||||||  |||||||  ||||||| ||||||||||||||| ||||||| |   |||||||| ||  ||    
T  17443503 agcaaataagatgaaattgcaacctttggtcaagccttcatctgaagctgtaatgctggtttgtccattagagttagatacgccattgtttgtttcaaat 17443404  T
Q  413 gcaattgcaacttcttcatcttcaacttgt 442  Q
    ||||||||||||||||||  ||||||||||    
T  17443403 gcaattgcaacttcttcacgttcaacttgt 17443374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 17443602 - 17443537
Alignment:
Q  93 tgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 158  Q
    ||||||||| |||||||| ||||||||||||||||||| |||| | | ||||||||||||||||||    
T  17443602 tgtttccataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaatacatc 17443537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 14299663 - 14299588
Alignment:
Q  53 gaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 130  Q
    ||||||||||||||||||  | | |||| |||||||  ||||||||||| |||||||| |||||||| | ||||||||    
T  14299663 gaaataagctgaaaacaa--tgtatggatatgtcataagttgtttccataaactcttccaaacagtccctcaagtgct 14299588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 43199930 - 43199982
Alignment:
Q  112 aaacagtctcacaagtgctaatatgactgtataagttcaaatacatcaatcca 164  Q
    ||||||||||||||||||| |||||| |  ||||||||||||| || ||||||    
T  43199930 aaacagtctcacaagtgcttatatgagtagataagttcaaataaatgaatcca 43199982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 13000457 - 13000381
Alignment:
Q  52 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 130  Q
    ||||||||||||||||||||||  |||||||||||||  |||||| |||| |||||||  ||| |||||||||||||||    
T  13000457 ggaaataagctgaaaacaactt--gtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagtgct 13000381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 30191174 - 30191098
Alignment:
Q  52 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 130  Q
    ||||||||||||||||||| |||||   |||||||||  ||||||||||| | |||| | ||||||||| |||||||||    
T  30191174 ggaaataagctgaaaacaagttttga--acatgtcataagttgtttccataagctctcccaaacagtctaacaagtgct 30191098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 30389108 - 30389157
Alignment:
Q  24 ttttcataagcttttctagacaacatacggaaataagctgaaaacaactt 73  Q
    |||||||||||||| ||||| ||| || | ||||||||||||||||||||    
T  30389108 ttttcataagctttcctagagaacttatgaaaataagctgaaaacaactt 30389157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 43115093 - 43115167
Alignment:
Q  52 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 128  Q
    ||||||||||||||||||| || ||  ||||||||||  ||||||||||| |||||||| ||||| |||||||||||    
T  43115093 ggaaataagctgaaaacaagttatg--gacatgtcataagttgtttccataaactcttccaaacaatctcacaagtg 43115167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 37273171 - 37273247
Alignment:
Q  52 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 130  Q
    ||||||||| |||||||||||| ||  ||||||||||  ||||||||||| | |||| | |||||||||||| ||||||    
T  37273171 ggaaataagttgaaaacaacttatg--gacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgct 37273247  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 24624250 - 24624344
Alignment:
Q  55 aataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaa 151  Q
    |||||||||||||||   ||| ||||||||||||  | ||||| ||| | |||||| ||||||||| |||||||||||| ||| |  ||||||||||    
T  24624250 aataagctgaaaacag--tttatggacatgtcataagctgttttcataagctcttccaaacagtcttacaagtgctaatgtgagtagataagttcaa 24624344  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 3468614 - 3468725
Alignment:
Q  15 tataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaa 114  Q
    |||||||  ||||||||| || | ||||| ||| |  ||||||||| || ||||||||| ||  ||||||||||| ||||||||||  |||||| |||||    
T  3468614 tataagcttttttcataatctatcctagagaacttgtggaaataagttggaaacaacttatg--gacatgtcattagttgtttccaacaactctccgaaa 3468711  T
Q  115 cagtctcacaagtg 128  Q
    |||||||| |||||    
T  3468712 cagtctcaaaagtg 3468725  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 39345508 - 39345581
Alignment:
Q  52 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 127  Q
    ||||||||||||||| |||||| ||  ||||||||||    ||||||||| |||||| | ||||||||||||||||    
T  39345508 ggaaataagctgaaagcaacttatg--gacatgtcataaactgtttccatgaactctaccaaacagtctcacaagt 39345581  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 15581316 - 15581367
Alignment:
Q  79 gacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 130  Q
    ||||||||||  ||||||||||||| |||||| ||||| |||||||||||||    
T  15581316 gacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgct 15581367  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 28837075 - 28837002
Alignment:
Q  55 aataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 130  Q
    ||||||||||||||| ||| ||||  ||||||||| | |||||   |||| ||||| |||||||||||||||||||    
T  28837075 aataagctgaaaacagcttatgtg--catgtcattagctgttttggttaagtcttctaaacagtctcacaagtgct 28837002  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 30014139 - 30014095
Alignment:
Q  24 ttttcataagcttttctagacaacatacggaaataagctgaaaac 68  Q
    |||||||||||| | ||||| ||| ||||||||||||||||||||    
T  30014139 ttttcataagctatgctagagaacttacggaaataagctgaaaac 30014095  T

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Target: scaffold0311 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 10650 - 10577
Alignment:
Q  52 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 127  Q
    ||||||||||||||||||||  || ||||||||||||| ||||||| ||| | || |   ||||||||||||||||    
T  10650 ggaaataagctgaaaacaac--ttatggacatgtcattagttgtttacataagctttgtcaaacagtctcacaagt 10577  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 9843285 - 9843212
Alignment:
Q  53 gaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 128  Q
    |||||||||||||||||||  || |||| |||| ||| ||||||| | | | ||||| ||||||||||||||||||    
T  9843285 gaaataagctgaaaacaac--ttatggatatgtgattagttgttttcttaatctctttgaaacagtctcacaagtg 9843212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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