View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0309_low_5 (Length: 497)
Name: NF0309_low_5
Description: NF0309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0309_low_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 77 - 497
Target Start/End: Original strand, 7375335 - 7375779
Alignment:
| Q |
77 |
gaagaatatggaggtagaagagaaggaagagagtgtgggaacaagtttgggggaggaaggaattgaggaaagtgtggatgtgaaagaaga---------- |
166 |
Q |
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| T |
7375335 |
gaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttggtggaggaaggaattaaggaaagtgtagatgtgaaagaagaggagggtaga |
7375434 |
T |
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| Q |
167 |
-----aaatggatttgaggaggttaagg------aggaagaagatggagggaatagaaaaatgttgaaaaggatgatggaggacaatgaaaagatgatgg |
255 |
Q |
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| T |
7375435 |
attggaaatgaatttgaggaggagaattgttataaggaagaagatggagggaatagaaaaatgttgaaaaggatgatggaggacaatgagaagatgatgg |
7375534 |
T |
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| Q |
256 |
aaatgatgtcacaattatttgagaggaatgaaaagcaaacaacacttcttacatctctcacacaaagggtggagcagcttgagagagcttttacttttga |
355 |
Q |
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| T |
7375535 |
aaatgatggcacaattatttgagaggaatgagaagcaaacaacacttcttacatctcttacacaaagagtggagcagcttgagagagcttttacttttga |
7375634 |
T |
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| Q |
356 |
caagttgaggaggaagaataagaagaggaggaatcttgatgccaaacacagacataatggttgcatttgatgacttttgctttctttaatgatcttgttt |
455 |
Q |
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| T |
7375635 |
caagttgaggaggaagaataagaagaggaggaatgttgatgccaaacacagacataatggttgcatttgatgacttttgctttgtttaatgatcttgtct |
7375734 |
T |
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| Q |
456 |
ttgtaatgaa-tttgt--tctctcaatcatgtgtttattgtgatc |
497 |
Q |
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| T |
7375735 |
ttgtaatgaattttgttgtctctcaatcatgtgtttattgtgatc |
7375779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 77 - 496
Target Start/End: Complemental strand, 7278504 - 7278061
Alignment:
| Q |
77 |
gaagaatatggaggtagaagagaaggaagagagtgtgggaacaagtttgggggaggaaggaattgaggaaagtgtggatgtgaaagaaga---------- |
166 |
Q |
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| T |
7278504 |
gaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttggtggaggaaggaattaaggaaagtgtagatgtgaaagaagaggagggtaga |
7278405 |
T |
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| Q |
167 |
-----aaatggatttgaggaggttaagg------aggaagaagatggagggaatagaaaaatgttgaaaaggatgatggaggacaatgaaaagatgatgg |
255 |
Q |
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| T |
7278404 |
attggaaatgaatttgaggaggagaattgttataaggaagaagatggagggaatagaaaaatgttgaaaaggatgatggaggacaatgagaagatgatgg |
7278305 |
T |
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| Q |
256 |
aaatgatgtcacaattatttgagaggaatgaaaagcaaacaacacttcttacatctctcacacaaagggtggagcagcttgagagagcttttacttttga |
355 |
Q |
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| T |
7278304 |
aaatgatggcacaattatttgagaggaatgagaagcaaacaacacttcttacatctcttacacaaagagtggagcagcttgagagagcatttacttttga |
7278205 |
T |
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| Q |
356 |
caagttgaggaggaagaataagaagaggaggaatcttgatgccaaacacagacataatggttgcatttgatgacttttgctttctttaatgatcttgttt |
455 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
7278204 |
caagttgaggaggaagaataagaagaggaggaatgttgatgccaaacacagacataatggttgcatttgatgacttttgctttgtttaatgatcttgtct |
7278105 |
T |
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| Q |
456 |
ttgtaatgaa-tttgt--tctctcaatcatgtgtttattgtgat |
496 |
Q |
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| T |
7278104 |
ttgtaatgaattttgttgtctctcaatcatgtgtttattgtgat |
7278061 |
T |
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