View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0310_high_1 (Length: 466)

Name: NF0310_high_1
Description: NF0310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0310_high_1
NF0310_high_1
[»] chr8 (21 HSPs)
chr8 (13-404)||(4888388-4888779)
chr8 (89-354)||(4774567-4774830)
chr8 (198-367)||(4705036-4705202)
chr8 (195-367)||(4921217-4921386)
chr8 (201-368)||(10448923-10449087)
chr8 (210-367)||(4727782-4727936)
chr8 (181-368)||(4738269-4738453)
chr8 (274-364)||(4872224-4872314)
chr8 (209-367)||(4717204-4717359)
chr8 (209-366)||(4751670-4751824)
chr8 (279-370)||(4690634-4690725)
chr8 (213-363)||(4802833-4802980)
chr8 (203-364)||(4848031-4848192)
chr8 (203-364)||(4827726-4827884)
chr8 (13-65)||(4682609-4682661)
chr8 (201-368)||(4898970-4899128)
chr8 (223-358)||(4682785-4682917)
chr8 (201-257)||(21437842-21437898)
chr8 (17-55)||(4727615-4727653)
chr8 (13-62)||(4775024-4775073)
chr8 (203-235)||(4872413-4872445)


Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 13 - 404
Target Start/End: Complemental strand, 4888779 - 4888388
Alignment:
Q  13 atactcaaagcaatattaattcacattatattcaagaaaaagacagattttctaaaaagctctttataacaataaattcattcaaaaggcttgaactcaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4888779 atactcaaagcaatattaattcacattatattcaagaaaaagacagattttctaaaaagctctttataacaataaattcattcaaaaggcttgaactcaa 4888680  T
Q  113 taccttacttaaatgatgtgaatcttatagtttcactcggagcaagataatgcaaatctacctattatattataactaattcctaagaacctttgacttc 212  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4888679 taccttacttaaattatgtgaatcttatagtttcactcggagcaagataatgcaaatctacctattatattataactaattcctaagaacctttgacttc 4888580  T
Q  213 tttcagtgtggatgataatcctggtctttgtaagactgaatcatgcaaaaagaagaagaaattgtttgtaccacttattgcatcattttcagcatttatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4888579 tttcagtgtggatgataatcctggtctttgtaagactgaatcatgcaaaaagaagaagaaattgtttgtaccacttattgcatcattttcagcatttatt 4888480  T
Q  313 gtaatcctcttgatttctcttggatttcggatgttcagaagacaaacaggtacttcttgaaggacattgaaatgagatcatattcgctaatt 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  4888479 gtaatcctcttgatttctcttggatttcggatgttcagaagacaaacaggtacttcttgaaggacatagaaatgagatcatattcgcaaatt 4888388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 89 - 354
Target Start/End: Complemental strand, 4774830 - 4774567
Alignment:
Q  89 ttcattcaaaaggcttgaactcaataccttacttaaatgatgtgaatcttatagtttcactcggagcaagataatgcaaatctacctattatattataac 188  Q
    |||| |||||||||||||  ||||||||||||||| |  ||||||||||||  |||||||||  || ||||||||| |||| || | || |||| |||||    
T  4774830 ttcaatcaaaaggcttgagttcaataccttacttagaatatgtgaatctta--gtttcactcaaagtaagataatgtaaatataacaatgatatgataac 4774733  T
Q  189 taattcctaagaacctttgacttctttcagtgtggatgataatcctggtctttgtaagactgaatcatgcaaaaagaagaagaaattgtttgtaccactt 288  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||| || |||||||| |  |||||||||| |||||||||||| |||||||||||||||    
T  4774732 taatacctaagcacctttgacttctttcagtgtagatgataatcccggcctttgtaaaaaggaatcatgcagaaagaagaagaatttgtttgtaccactt 4774633  T
Q  289 attgcatcattttcagcatttattgtaatcctcttgatttctcttggatttcggatgttcagaaga 354  Q
    || ||||| ||||||||| | ||||||||| |||||||||||||||||||| |||| |||| ||||    
T  4774632 atagcatcgttttcagcaatgattgtaatcgtcttgatttctcttggattttggatattcaaaaga 4774567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 198 - 367
Target Start/End: Original strand, 4705036 - 4705202
Alignment:
Q  198 agaacctttgacttctttcagtgtggatgataatcctggtctttgtaagactgaatcatgcaaaaagaagaagaaattgtttgtaccacttattgcatca 297  Q
    |||||||||  ||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||| |  ||||  ||||||||| |||||||     
T  4705036 agaacctttatcttctttcagtgtggatgataatcctgatctttgtaagacggaatcttgcaaaaagaagaaca--ttgta-gtaccacttgttgcatct 4705132  T
Q  298 ttttcagcatttattgtaatcctcttgatttctcttggatttcggatgttcagaagacaaacaggtactt 367  Q
    |||||||||||   |||||| || ||||||||||||||| || || |||| |||||||||||||||||||    
T  4705133 ttttcagcattagctgtaattcttttgatttctcttggaatttggttgtttagaagacaaacaggtactt 4705202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 195 - 367
Target Start/End: Complemental strand, 4921386 - 4921217
Alignment:
Q  195 ctaagaacctttgacttctttcagtgtggatgataatcctggtctttgtaagactgaatcatgcaaaaagaagaagaaattgtttgtaccacttattgca 294  Q
    ||||| ||||||||||||||||||||| ||||||||||||| |||||||| ||| | | |||||| |||||| ||    ||   ||||||||||||||||    
T  4921386 ctaagcacctttgacttctttcagtgtagatgataatcctgatctttgtatgacggcaccatgcagaaagaaaaat---ttaactgtaccacttattgca 4921290  T
Q  295 tcattttcagcatttattgtaatcctcttgatttctcttggatttcggatgttcagaagacaaacaggtactt 367  Q
    |||||||| ||||| ||||| ||||| |||||||||||||||||| |||| ||||||||||| | ||||||||    
T  4921289 tcattttctgcattaattgttatcctattgatttctcttggattttggatattcagaagacagaaaggtactt 4921217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 201 - 368
Target Start/End: Original strand, 10448923 - 10449087
Alignment:
Q  201 acctttgacttctttcagtgtggatgataatcctggtctttgtaagactgaatcatgcaaaaagaagaagaaattgtttgtaccacttattgcatcattt 300  Q
    |||||| ||||||||||||||||||||||||||||  ||||||| ||| ||||| |||||||||||||  | |||| ||||||||||| || |||  |||    
T  10448923 acctttaacttctttcagtgtggatgataatcctgaactttgtacgacggaatcctgcaaaaagaaga--acattg-ttgtaccacttgttacattgttt 10449019  T
Q  301 tcagcatttattgtaatcctcttgatttctcttggatttcggatgttcagaagacaaacaggtacttc 368  Q
    ||| |||| ||||||||||| |||||||||||||||||| |||| |  |||||||||| |||||||||    
T  10449020 tcaacattaattgtaatccttttgatttctcttggattttggatatatagaagacaaaaaggtacttc 10449087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 210 - 367
Target Start/End: Original strand, 4727782 - 4727936
Alignment:
Q  210 ttctttcagtgtggatgataatcctggtctttgtaagactgaatcatgcaaaaagaagaagaaattgtttgtaccacttattgcatcattttcagcattt 309  Q
    ||||||||||||||| || ||||||| |||||||| ||| ||||| |||||||||||||| |  ||||| ||||||||| ||||||| || ||||| ||     
T  4727782 ttctttcagtgtggaagacaatcctgatctttgtatgacagaatcctgcaaaaagaagaaca--ttgtt-gtaccacttgttgcatcgttctcagcttta 4727878  T
Q  310 attgtaatcctcttgatttctcttggatttcggatgttcagaagacaaacaggtactt 367  Q
     |||||||||| |||||||||||||||||| |||| ||||||||||||| ||||||||    
T  4727879 gttgtaatccttttgatttctcttggattttggatattcagaagacaaaaaggtactt 4727936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 181 - 368
Target Start/End: Original strand, 4738269 - 4738453
Alignment:
Q  181 attataactaattcctaagaacctttgacttctttcagtgtggatgataatcctggtctttgtaagactgaatcatgcaaaaagaagaagaaattgtttg 280  Q
    ||||||||||||  || |||||||||  ||| || |||||||||||||||||||| |||||||| ||| ||||| |||||||||||||| |   |  |||    
T  4738269 attataactaatatcttagaacctttatctttttgcagtgtggatgataatcctgatctttgtatgacagaatcctgcaaaaagaagaaca---ttattg 4738365  T
Q  281 taccacttattgcatcattttcagcatttattgtaatcctcttgatttctcttggatttcggatgttcagaagacaaacaggtacttc 368  Q
    |||||||  ||||||| |||||||||||  |||||||| | || |||||| |||||||| |||| ||||||||||||| |||||||||    
T  4738366 taccactggttgcatcgttttcagcattagttgtaatcatttttatttcttttggattttggatattcagaagacaaaaaggtacttc 4738453  T

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Target: chr8; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 274 - 364
Target Start/End: Complemental strand, 4872314 - 4872224
Alignment:
Q  274 ttgtttgtaccacttattgcatcattttcagcatttattgtaatcctcttgatttctcttggatttcggatgttcagaagacaaacaggta 364  Q
    |||||||||||||||||||||||||||||| |||| |||| |||||| |||||||||||||||||| |||| ||||||||||||| |||||    
T  4872314 ttgtttgtaccacttattgcatcattttcaacattaattgcaatccttttgatttctcttggattttggatattcagaagacaaaaaggta 4872224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 367
Target Start/End: Original strand, 4717204 - 4717359
Alignment:
Q  209 cttctttcagtgtggatgataatcctggtctttgtaagactgaatcatgcaaaaagaagaagaaattgtttgtaccacttattgcatcattttcagcatt 308  Q
    ||||||||||||||||||||||||||| |||||| | ||| ||||| ||||||||||||||    ||||| ||||||||| ||||||| || ||||||||    
T  4717204 cttctttcagtgtggatgataatcctgatctttgcatgacggaatcctgcaaaaagaagaacg--ttgtt-gtaccacttgttgcatctttatcagcatt 4717300  T
Q  309 tattgtaatcctcttgatttctcttggatttcggatgttcagaagacaaacaggtactt 367  Q
       |||||| || ||||||||||||||| || || |||| |||||| ||||||||||||    
T  4717301 agctgtaattcttttgatttctcttggaatttggttgtttagaagaaaaacaggtactt 4717359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 366
Target Start/End: Original strand, 4751670 - 4751824
Alignment:
Q  209 cttctttcagtgtggatgataatcctggtctttgtaagactgaatcatgcaaaaagaagaagaaattgtttgtaccacttattgcatcattttcagcatt 308  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||| || |||||||| ||    ||   ||||| |||  ||||||| |||||||||||    
T  4751670 cttctttcagtgtggatgataatcctgatctttgtatgacggaatcctgtaaaaagaaaaac---tttactgtacaactggttgcatcgttttcagcatt 4751766  T
Q  309 tattgtaatcctcttgatttctcttggatttcggatgttcagaagacaaacaggtact 366  Q
      |||||||||| ||||||||| |||||||| |||| ||||||||||||| |||||||    
T  4751767 agttgtaatccttttgatttcttttggattttggatattcagaagacaaaaaggtact 4751824  T

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Target: chr8; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 279 - 370
Target Start/End: Original strand, 4690634 - 4690725
Alignment:
Q  279 tgtaccacttattgcatcattttcagcatttattgtaatcctcttgatttctcttggatttcggatgttcagaagacaaacaggtacttctt 370  Q
    |||||||||| |||||||||||||||||||  |||||||| ||||||||||||||||| || |||| || |||||||| | |||||||||||    
T  4690634 tgtaccacttgttgcatcattttcagcattagttgtaatcgtcttgatttctcttggactttggatattgagaagacagaaaggtacttctt 4690725  T

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Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 213 - 363
Target Start/End: Complemental strand, 4802980 - 4802833
Alignment:
Q  213 tttcagtgtggatgataatcctggtctttgtaagactgaatcatgcaaaaagaagaagaaattgtttgtaccacttattgcatcattttcagcatttatt 312  Q
    ||||||||||| ||  |||| || |||||||| ||| |  || |||||||||||||| |  ||||| ||||||||| |||||||||||||||||||  ||    
T  4802980 tttcagtgtggctggcaatcatgatctttgtatgacgggttcgtgcaaaaagaagaaca--ttgtt-gtaccacttgttgcatcattttcagcattattt 4802884  T
Q  313 gtaatcctcttgatttctcttggatttcggatgttcagaagacaaacaggt 363  Q
     ||||| ||||||| |||||||||||||| || |||| |||||||| ||||    
T  4802883 ctaatcatcttgatctctcttggatttcgcatattcaaaagacaaaaaggt 4802833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 364
Target Start/End: Complemental strand, 4848192 - 4848031
Alignment:
Q  203 ctttgacttctttcagtgtggatgataatcctggtctttgtaagactgaatcatgcaaaaagaagaagaaattgtttgtaccacttattgcatcattttc 302  Q
    ||||| ||| ||||||||||| ||  ||||||| |||||||| ||| |  ||||||||||||||||| |  ||||| ||||||||| |||||||||||||    
T  4848192 ctttgtcttttttcagtgtggctggaaatcctgatctttgtatgacgggttcatgcaaaaagaagaaca--ttgtt-gtaccacttgttgcatcattttc 4848096  T
Q  303 agcatttattgtaatcctcttg---atttctcttggatttcggatgttcagaagacaaacaggta 364  Q
    ||||||  || ||||| |||||   || |||||||||||||| || |||| |||||||| |||||    
T  4848095 agcattatttctaatcatcttgatcatctctcttggatttcgcatattcaaaagacaaaaaggta 4848031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 364
Target Start/End: Complemental strand, 4827884 - 4827726
Alignment:
Q  203 ctttgacttctttcagtgtggatgataatcctggtctttgtaagactgaatcatgcaaaaagaagaagaaattgtttgtaccacttattgcatcattttc 302  Q
    |||| |||||||||||||||||||| ||||| | ||||||||  |  |  ||||||||||| ||||| |  ||||| |||||| |||||| |||| ||||    
T  4827884 cttttacttctttcagtgtggatgacaatcccgatctttgtataaagggctcatgcaaaaataagaaca--ttgtt-gtaccaattattggatcactttc 4827788  T
Q  303 agcatttattgtaatcctcttgatttctcttggatttcggatgttcagaagacaaacaggta 364  Q
    || |||  |||||||||||||||| ||||||| |||| |||  ||||||||||||| |||||    
T  4827787 aggattagttgtaatcctcttgatctctcttgcattttggagattcagaagacaaaaaggta 4827726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 4682609 - 4682661
Alignment:
Q  13 atactcaaagcaatattaattcacattatattcaagaaaaagacagattttct 65  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  4682609 atactcaaagctatattaattcacattatattcaagaaaacgacagattttct 4682661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 368
Target Start/End: Complemental strand, 4899128 - 4898970
Alignment:
Q  201 acctttgacttctttcagtgtggatgataatcctggtctttgtaagactgaatcatgcaaaaagaagaagaaattgtttgtaccacttattgcatcattt 300  Q
    ||||||||| | ||||||||| ||||||||||||| |||||||| ||| ||||| ||   |   |||||||| || |||||||||||||||  || |||     
T  4899128 acctttgacatttttcagtgtagatgataatcctgatctttgtatgacggaatcttgtgga---aagaagaatttttttgtaccacttatt--attatt- 4899035  T
Q  301 tcagcatttattgtaatcctcttgatttctcttggatttcggatgttcagaagacaaacaggtacttc 368  Q
       ||||| |||||||| || ||||||| |||||||| | |||| ||||||| ||||| |||||||||    
T  4899034 ---gcattaattgtaatgcttttgatttttcttggatattggatattcagaacacaaaaaggtacttc 4898970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 358
Target Start/End: Original strand, 4682785 - 4682917
Alignment:
Q  223 gatgataatcctggtctttgtaagactgaatcatgcaaaaagaagaagaaattgtttgtaccacttattgcatcattttcagcatttattgtaatcctct 322  Q
    |||||||| | || || ||||| ||| ||||| |||||||||||||| |  ||| | ||||||||| ||||||| |||||||||||   ||||||||| |    
T  4682785 gatgataaccttgatccttgtatgacggaatcttgcaaaaagaagaaca--ttgct-gtaccacttgttgcatcgttttcagcattagctgtaatccttt 4682881  T
Q  323 tgatttctcttggatttcggatgttcagaagacaaa 358  Q
    |||||||||| |||||| || | ||||||| |||||    
T  4682882 tgatttctctaggattttggctattcagaaaacaaa 4682917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 21437898 - 21437842
Alignment:
Q  201 acctttgacttctttcagtgtggatgataatcctggtctttgtaagactgaatcatg 257  Q
    ||||||||||| ||||||||| ||||||||||||| |||||||| |||  |||||||    
T  21437898 acctttgacttttttcagtgtagatgataatcctgatctttgtatgacgaaatcatg 21437842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 4727615 - 4727653
Alignment:
Q  17 tcaaagcaatattaattcacattatattcaagaaaaaga 55  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  4727615 tcaaagctatattaattcacattatattcaagcaaaaga 4727653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 4775073 - 4775024
Alignment:
Q  13 atactcaaagcaatattaattcacattatattcaagaaaaagacagattt 62  Q
    ||||||||||| |||| |||||| |||||||||  |||||||||||||||    
T  4775073 atactcaaagctatatcaattcatattatattcttgaaaaagacagattt 4775024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 4872445 - 4872413
Alignment:
Q  203 ctttgacttctttcagtgtggatgataatcctg 235  Q
    ||||||||||||||||||||||| |||||||||    
T  4872445 ctttgacttctttcagtgtggatcataatcctg 4872413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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