View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0310_low_3 (Length: 257)
Name: NF0310_low_3
Description: NF0310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0310_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 32688164 - 32688403
Alignment:
| Q |
6 |
agtcaggtcgtcaaaatatttcaaatagacaacgcaacagctagggctggccctttcactgaacaatgtgcaaccaactagatagagcagaaaagctctg |
105 |
Q |
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|||||| |||||||| ||||||||||||||||| ||||||||| || |||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32688164 |
agtcagttcgtcaaagtatttcaaatagacaacacaacagctactgccggccttatcactgaacaatgtgcaaccaactagatagagcagaaaagctctg |
32688263 |
T |
|
| Q |
106 |
atgcaccgagtccggtaccattccatcgaatctttctccccaggctgattcgcatacaatttcgcttcggtcagatagctcgtgtaaatactcaaaagcg |
205 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32688264 |
atgcaccgagtccggtaccattccatcgaatcttcctccccaggctgattcgcatacgatttcgcttcggtcagatagctcgtgtaaatactcaaaagcg |
32688363 |
T |
|
| Q |
206 |
tatcataagtgatatgtgccgatttcaaacttttggtctc |
245 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |
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| T |
32688364 |
tatcataagtgatatgtgccgatttcaaacgtttggtctc |
32688403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 19811281 - 19811519
Alignment:
| Q |
6 |
agtcaggtcgtcaaaatatttcaaatagacaacgcaacagctagggctggccctttcactgaacaatgtgcaaccaactagatagagcagaaaagctctg |
105 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||| || |||| | ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19811281 |
agtcaggtcgtcaaagtatttcaaatagacaacacaacagctattgccggccttatcactgaacaatgtgcaaccaactagatagagcaggaaagctctg |
19811380 |
T |
|
| Q |
106 |
atgcaccgagtccggtaccattccatcgaatctttctccccaggctgattcgcatacaatttcgcttcggtcagatagctcgtgtaaatactcaaaagcg |
205 |
Q |
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|||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19811381 |
atgcaccgagtccggtaccattccattgaatcttcctcctcaggctgattcgcatacgatttcgcttcggtcagatagctcgtgtaaatactcagaagcg |
19811480 |
T |
|
| Q |
206 |
tatcataagtgatatgtgccgatttcaaacttttggtct |
244 |
Q |
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||||||||||||||||||||||| |||||| |||||||| |
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| T |
19811481 |
tatcataagtgatatgtgccgatctcaaacgtttggtct |
19811519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 152 - 245
Target Start/End: Original strand, 22520494 - 22520587
Alignment:
| Q |
152 |
gattcgcatacaatttcgcttcggtcagatagctcgtgtaaatactcaaaagcgtatcataagtgatatgtgccgatttcaaacttttggtctc |
245 |
Q |
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||||| ||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
22520494 |
gattcacatacgatttcgcttcagtcagatagctcgtgtaaatactcagaagcgtatcataagtgatatgtgccgatctcaaacgtttggtctc |
22520587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 1200388 - 1200630
Alignment:
| Q |
6 |
agtcaggtcgtcaaaatatttcaaatagacaacgcaacagctagggctggccctttcactgaacaatgtgcaaccaactagatagagcagaaaagctctg |
105 |
Q |
| |
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||||||||||||||| ||||||||||||||||| ||||||||| || |||| | |||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
1200388 |
agtcaggtcgtcaaagtatttcaaatagacaacacaacagctactgccggccttatcactgaaaaatgtgcaaccaactagatagagcaggaaagctctg |
1200487 |
T |
|
| Q |
106 |
atgcaccgagtccggtaccattccatcgaatctttctccccaggctgattcgcatacaatttcgcttcggtcagatagctcgtgtaaatactcaaaagcg |
205 |
Q |
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||||||| |||||||||||||||||| ||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1200488 |
atgcaccaagtccggtaccattccattgaatcttcctcctcaggctgattcacatacgatttcgcttcggtcagatagctcgtgtaaatactcagaagcg |
1200587 |
T |
|
| Q |
206 |
tatcataagtgatatgtgccgatttcaaacttttggtctctgc |
248 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
1200588 |
tatcataagtgatatgtgccgatctcaaacgtttggtctctgc |
1200630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 68 - 248
Target Start/End: Complemental strand, 25748930 - 25748750
Alignment:
| Q |
68 |
acaatgtgcaaccaactagatagagcagaaaagctctgatgcaccgagtccggtaccattccatcgaatctttctccccaggctgattcgcatacaattt |
167 |
Q |
| |
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|||| ||||| | ||||||||| ||||| |||||||| ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| |||| |
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| T |
25748930 |
acaacgtgcagctaactagataaagcaggaaagctctaatgcaccgagtccagtaccattccattgaatcttcctccccaggctgattcgcatatgattt |
25748831 |
T |
|
| Q |
168 |
cgcttcggtcagatagctcgtgtaaatactcaaaagcgtatcataagtgatatgtgccgatttcaaacttttggtctctgc |
248 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
25748830 |
tgcttcggtcagatagctcgtgtaaatactcataagcgtatcataagtgatatgtgtcgatttcaaacgtttggtctctgc |
25748750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 161
Target Start/End: Original strand, 47851959 - 47852059
Alignment:
| Q |
61 |
tcactgaacaatgtgcaaccaactagatagagcagaaaagctctgatgcaccgagtccggtaccattccatcgaatctttctccccaggctgattcgcat |
160 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| |||||||| |||||| ||||| |||||||||||| | ||| |||||||||||||||||||| |
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| T |
47851959 |
tcactaaacaatgtgcagccaactagatagagcaggaaagctctaatgcactgagtctggtaccattccaatgctacttcctccccaggctgattcgcat |
47852058 |
T |
|
| Q |
161 |
a |
161 |
Q |
| |
|
| |
|
|
| T |
47852059 |
a |
47852059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 18296527 - 18296596
Alignment:
| Q |
61 |
tcactgaacaatgtgcaaccaactagatagagcagaaaagctctgatgcaccgagtccggtaccattcca |
130 |
Q |
| |
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||||| ||||||||||| |||||||||||||||| |||||||| |||||||||||| |||||||||||| |
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| T |
18296527 |
tcactaaacaatgtgcagccaactagatagagcaagaaagctctaatgcaccgagtctggtaccattcca |
18296596 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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