View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0314_high_1 (Length: 383)
Name: NF0314_high_1
Description: NF0314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0314_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 375
Target Start/End: Original strand, 11861416 - 11861777
Alignment:
| Q |
14 |
tctctacctgaaggtttccagtcttcgagttcactccaaaaactcactattgaaagatgtcaagaacttgatcttgacaactctcaaaataagtgggagg |
113 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| |
|
|
| T |
11861416 |
tctctaccacaaggtttcaagtctttgagttcactccaaacactcactattgaaagatgtcaagaacttgatcttgacaaacatccaaatgagtgggagg |
11861515 |
T |
|
| Q |
114 |
gtctgaaaaaccttcgttctcttacagtaaggagtattccaaaactgaagtcccttccatggggagctgaaaacgtgaaaactttgaaagacttaaggat |
213 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||||||||||||||| |
|
|
| T |
11861516 |
gtctgaaaaaccttcgttctcttacattaaggagtattccaaaacttaagtcccttccatggggagttgaaaatgtgaacactttgaaagacttaaggat |
11861615 |
T |
|
| Q |
214 |
ttatgattgccatggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagttaggttctctg |
313 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11861616 |
ttatgattgtcatggtttaacttttttaccagaaagtataggtaacctcacttcacttgaaaaactggttctttctgaatgcagaaagttagattctctg |
11861715 |
T |
|
| Q |
314 |
cccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgtt |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11861716 |
cccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgtt |
11861777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 107 - 375
Target Start/End: Original strand, 11829410 - 11829678
Alignment:
| Q |
107 |
tgggagggtctgaaaaaccttcgttctcttacagtaaggagtattccaaaactgaagtcccttccatggggagctgaaaacgtgaaaactttgaaagact |
206 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11829410 |
tgggagggtctgaaaaaccttcaatctcttacattaaggagtattccaaaactgaagtcccttccatggggagttgaaaacgtgaaaactttgaaagact |
11829509 |
T |
|
| Q |
207 |
taaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagttagg |
306 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
11829510 |
tgaggatttatgattgtcatggtttaacttctttaccagaaagtataggtaacctcacttcacttgaaagactggttctttctgaatgcagaaatttaga |
11829609 |
T |
|
| Q |
307 |
ttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgtt |
375 |
Q |
| |
|
|||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11829610 |
ttctcttcccaaaggaatggaaatgcttcagtctctaaatactttgattattatggattgccctttgtt |
11829678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 8 - 375
Target Start/End: Original strand, 12040205 - 12040572
Alignment:
| Q |
8 |
ttgaattctctacctgaaggtttccagtcttcgagttcactccaaaaactcactattgaaagatgtcaagaacttgatcttgacaactctcaaaataagt |
107 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| |||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||| | |||| ||| |
|
|
| T |
12040205 |
ttgaagtctctacctgaaggtttccggtctttgagttcactcgaaacactcactattgaaagatgtcaacaacttgatcttgagtcctccccaaatgagt |
12040304 |
T |
|
| Q |
108 |
gggagggtctgaaaaaccttcgttctcttacagtaaggagtattccaaaactgaagtcccttccatggggagctgaaaacgtgaaaactttgaaagactt |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||| || ||||||||||| |||| || | ||||| |||| ||| ||| |
|
|
| T |
12040305 |
gggagggtctgataaaccttcgttctcttacattaaggagtattccaaatctcaagtcccttcctcagggattcgagattgtgaactctttacaagtctt |
12040404 |
T |
|
| Q |
208 |
aaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagttaggt |
307 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| | || ||||| ||| | ||| | ||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
12040405 |
aaggctttatgattgccagggtttaacttctctcccggaaagcatatgcaacttcgcttcacttgaaaaactggttctttcggaatgcagaaagttagat |
12040504 |
T |
|
| Q |
308 |
tctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgtt |
375 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| ||||||||||||| ||| ||||| ||||| |
|
|
| T |
12040505 |
tctctgcccaaaggaatggaaacgctacagtctctaaagactttgattattagggactgcccgttgtt |
12040572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 24 - 375
Target Start/End: Complemental strand, 11901092 - 11900741
Alignment:
| Q |
24 |
aaggtttccagtcttcgagttcactccaaaaactcactattgaaagatgtcaagaacttgatcttgacaactctcaaaataagtgggagggtctgaaaaa |
123 |
Q |
| |
|
|||||||| |||||| |||||||||| | |||||||||||| |||||| ||||||||||||| |||| ||| || | | ||| ||||||||| ||| |
|
|
| T |
11901092 |
aaggtttcaagtctttgagttcactcatatcactcactattgagagatgtgaagaacttgatctcgacatctccggaactgaatggaagggtctgagaaa |
11900993 |
T |
|
| Q |
124 |
ccttcgttctcttacagtaaggagtattccaaaactgaagtcccttccatggggagctgaaaacgtgaaaactttgaaagacttaaggatttatgattgc |
223 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| |||||||||||| ||| | ||||||| |||| ||||| | || |||||| ||||||||||| |
|
|
| T |
11900992 |
gcttcgttctcttacattaaggagtattcccaaactcaagtcccttccaagggaaattgaaaacttgaactctttgcatgatttaaggctttatgattgc |
11900893 |
T |
|
| Q |
224 |
catggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagttaggttctctgcccaaaggaa |
323 |
Q |
| |
|
|||||| ||||| || ||||||| ||||||||||| ||||| |||| ||||| ||| |||||||||||||||| |||| || ||||||||| || | |
|
|
| T |
11900892 |
catggtctaactgacctaacagaaagcataggtaacctcacttcccttggcaaactagttatttctgaatgcagaaatttagattatctgcccaagggga |
11900793 |
T |
|
| Q |
324 |
tggaaaagcttgagtctctaaatactttgattattatggattgccctttgtt |
375 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11900792 |
tggaaatgctacagtctctaaatactttgattattatggattgccctttgtt |
11900741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 131 - 375
Target Start/End: Original strand, 11733223 - 11733467
Alignment:
| Q |
131 |
tctcttacagtaaggagtattccaaaactgaagtcccttccatggggagctgaaaacgtgaaaactttgaaagacttaaggatttatgattgccatggtt |
230 |
Q |
| |
|
|||||||| ||||||||||||||||||| | ||||| || | ||| || |||| ||||| | |||||||| ||||||||||||||||||| | ||| |
|
|
| T |
11733223 |
tctcttactttaaggagtattccaaaactagtgacccttacacgcggatttggaaacttgaaatcattgaaagatttaaggatttatgattgccctagtt |
11733322 |
T |
|
| Q |
231 |
taacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaa |
330 |
Q |
| |
|
||||| ||||||||||| |||| || || ||||||||| |||||||||||||||||||||||| | | ||||||||||||||||||| ||| |
|
|
| T |
11733323 |
taactcatttaccagaaaccatagacaatctcacttcacttcgtgaactggttctttctgaatgcagaagtatggattctctgcccaaaggaatgataaa |
11733422 |
T |
|
| Q |
331 |
gcttgagtctctaaatactttgattattatggattgccctttgtt |
375 |
Q |
| |
|
||| ||| ||| ||| ||||| |||||||| ||||| ||||| |
|
|
| T |
11733423 |
gctcacgtcactatttaccttgatcattatggactgccccttgtt |
11733467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University