View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0314_low_1 (Length: 448)
Name: NF0314_low_1
Description: NF0314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0314_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 6e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 270 - 437
Target Start/End: Original strand, 11748978 - 11749145
Alignment:
| Q |
270 |
tttactaccaccatagcaataaaaatttcatggaaatacctctaatgtggaagagtccaacactccaaaatatgcagtgaattcttcctgtgtcaaccag |
369 |
Q |
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| T |
11748978 |
tttactaccaccatagcaataaaaatttcatggacatacctctaccgtggaagtgtccaacactccaaaatatgcagtgaattcttcctatgtcaaccag |
11749077 |
T |
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| Q |
370 |
gagcagtctttaagccaaacatgagtaggagacccacttagaagtacttcaagaaagcgagcattcat |
437 |
Q |
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| T |
11749078 |
gagcagtctttaagccaaacatgagtaggagacccacttagaagtacttcaagaaagcgagcattcat |
11749145 |
T |
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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 305 - 429
Target Start/End: Original strand, 52011204 - 52011328
Alignment:
| Q |
305 |
atacctctaatgtggaagagtccaacactccaaaatatgcagtgaattcttcctgtgtcaaccaggagcagtctttaagccaaacatgagtaggagaccc |
404 |
Q |
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| T |
52011204 |
atacctctaatatggaagtgtccaacattccaaaacatttagtgaattcttcctctgtcaaccaggagcaatctttaagccgaatatgagtaggaaaccc |
52011303 |
T |
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| Q |
405 |
acttagaagtacttcaagaaagcga |
429 |
Q |
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| T |
52011304 |
actcagaagtagttcaagaaagcga |
52011328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 437
Target Start/End: Original strand, 52001339 - 52001471
Alignment:
| Q |
305 |
atacctctaatgtggaagagtccaacactccaaaatatgcagtgaattcttcctgtgtcaaccaggagcagtctttaagccaaacatgagtaggagaccc |
404 |
Q |
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| T |
52001339 |
atacctctaatatggaattgtccaactttccaaaatattttgtaaattcttcctctgtcatccaagagcaatctttaagccgaatcacatttggaaatcc |
52001438 |
T |
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| Q |
405 |
acttagaagtacttcaagaaagcgagcattcat |
437 |
Q |
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| T |
52001439 |
acttagaagtagttcaagagagtgagcattcat |
52001471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 385
Target Start/End: Complemental strand, 51988294 - 51988214
Alignment:
| Q |
305 |
atacctctaatgtggaagagtccaacactccaaaatatgcagtgaattcttcctgtgtcaaccaggagcagtctttaagcc |
385 |
Q |
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||||||||||| |||||| |||||| |||||||||| | |||||||||| |||||||||| |||| |||||||||| |
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| T |
51988294 |
atacctctaatatggaagtgtccaatgttccaaaatattttataaattcttcctctgtcaaccagaagcaatctttaagcc |
51988214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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