View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0314_low_3 (Length: 360)

Name: NF0314_low_3
Description: NF0314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0314_low_3
NF0314_low_3
[»] chr3 (3 HSPs)
chr3 (185-342)||(2782514-2782671)
chr3 (14-95)||(2782343-2782424)
chr3 (274-353)||(18973100-18973179)
[»] chr2 (1 HSPs)
chr2 (193-353)||(42048555-42048715)
[»] chr8 (2 HSPs)
chr8 (187-353)||(31180275-31180440)
chr8 (274-353)||(40530935-40531014)
[»] chr1 (1 HSPs)
chr1 (313-353)||(38564604-38564644)
[»] chr7 (2 HSPs)
chr7 (302-351)||(26231835-26231884)
chr7 (322-353)||(46262465-46262496)
[»] chr6 (1 HSPs)
chr6 (313-351)||(12128599-12128637)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 185 - 342
Target Start/End: Original strand, 2782514 - 2782671
Alignment:
Q  185 acgcaccccaacaacaacaccagagatccacagaaaccacacgcaaacacccgaagcacagtgatcccgtagcaacatcaagctacttgatgtaccgtct 284  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| |||||||||| |||||||| ||    
T  2782514 acgcaccccaacaacaccactagagatccacagaaaccacacgcaaacacccgaagcacagcgatctcgtaccaacagcaagctacttaatgtaccgcct 2782613  T
Q  285 ttcatcgtaaaggagataaaccaccaaccatccagagactggatccaccacaattgca 342  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  2782614 ttcatcgtaaaggagataaaccaccaaccatctaaagactggatccaccacaattgca 2782671  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 2782343 - 2782424
Alignment:
Q  14 acatcatcaagacagcaaaacaacatcaccaatccctacaaacaaaccctagaacgcgtagggaaaacatccaaaggccata 95  Q
    |||||| ||||||| || |||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  2782343 acatcaccaagacaacataacatcatcaccaatccctacaaacaaaccccataacgcgtagggaaaacatccaaaggccata 2782424  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 353
Target Start/End: Complemental strand, 18973179 - 18973100
Alignment:
Q  274 atgtaccgtctttcatcgtaaaggagataaaccaccaaccatccagagactggatccaccacaattgcacgaccctttgc 353  Q
    |||||||||||||| |||   |||||| ||| | | || |||||| |||||||||||||||||| |||||||||||||||    
T  18973179 atgtaccgtctttcttcgcggaggagaaaaatctcaaatcatccaaagactggatccaccacaactgcacgaccctttgc 18973100  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 193 - 353
Target Start/End: Original strand, 42048555 - 42048715
Alignment:
Q  193 caacaacaacaccagagatccacagaaaccacacgcaaacacccgaagcacagtgatcccgtagcaacatcaagctacttgatgtaccgtctttcatcgt 292  Q
    |||||||| ||||||||||||| | ||||||||||| ||||||| | |||||  || ||||||  |||| |||| |||||   ||||| ||||||||||     
T  42048555 caacaacaccaccagagatccatataaaccacacgcgaacacccaacgcacaacgaccccgtacaaacaacaagatacttaccgtaccatctttcatcgc 42048654  T
Q  293 aaaggagataaaccaccaaccatccagagactggatccaccacaattgcacgaccctttgc 353  Q
     |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  42048655 gaaggagataaaccaccaaccatccagagactggatccaccacaactgcaagaccctttgc 42048715  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 187 - 353
Target Start/End: Original strand, 31180275 - 31180440
Alignment:
Q  187 gcaccccaacaacaacaccagagatccacagaaaccacacgcaaacacccgaagcacagtgatcccgtagcaacatcaagctacttgatgtaccgtcttt 286  Q
    ||||| || ||||| ||||| |||| |||| |||| || ||||||||||  ||||||| | |||||  | ||||| ||||||||||  |||||| |||||    
T  31180275 gcaccacaccaacaccaccaaagattcacataaac-actcgcaaacacctaaagcacaattatcccaaaccaacaacaagctacttattgtaccttcttt 31180373  T
Q  287 catcgtaaaggagataaaccaccaaccatccagagactggatccaccacaattgcacgaccctttgc 353  Q
    |  ||  ||||||| | ||||||||||||||| |||||| ||||||||||| |||||||||||||||    
T  31180374 cggcgcgaaggagagacaccaccaaccatccaaagactgaatccaccacaactgcacgaccctttgc 31180440  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 353
Target Start/End: Complemental strand, 40531014 - 40530935
Alignment:
Q  274 atgtaccgtctttcatcgtaaaggagataaaccaccaaccatccagagactggatccaccacaattgcacgaccctttgc 353  Q
    |||||||||||||| |||  ||||||| ||| | | || ||||||| ||||||||||||||||| |||||||||||||||    
T  40531014 atgtaccgtctttcttcgcgaaggagaaaaatctcaaatcatccagggactggatccaccacaactgcacgaccctttgc 40530935  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 38564644 - 38564604
Alignment:
Q  313 catccagagactggatccaccacaattgcacgaccctttgc 353  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  38564644 catccagagactggatccaccacaactgcacgaccctttgc 38564604  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 351
Target Start/End: Complemental strand, 26231884 - 26231835
Alignment:
Q  302 aaaccaccaaccatccagagactggatccaccacaattgcacgacccttt 351  Q
    ||||||||||||||||||| ||||||||||||||||   |||||||||||    
T  26231884 aaaccaccaaccatccagaaactggatccaccacaaccacacgacccttt 26231835  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 353
Target Start/End: Original strand, 46262465 - 46262496
Alignment:
Q  322 actggatccaccacaattgcacgaccctttgc 353  Q
    ||||||||||||||||||||||||||||||||    
T  46262465 actggatccaccacaattgcacgaccctttgc 46262496  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 12128637 - 12128599
Alignment:
Q  313 catccagagactggatccaccacaattgcacgacccttt 351  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  12128637 catccagagactggatccaccacaactgcacggcccttt 12128599  T

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