View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0314_low_7 (Length: 251)

Name: NF0314_low_7
Description: NF0314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0314_low_7
NF0314_low_7
[»] chr3 (4 HSPs)
chr3 (1-82)||(31824519-31824600)
chr3 (83-119)||(45012857-45012893)
chr3 (86-119)||(25258198-25258231)
chr3 (86-122)||(7231202-7231238)
[»] chr4 (2 HSPs)
chr4 (135-220)||(5244532-5244617)
chr4 (175-222)||(37397965-37398013)
[»] chr7 (2 HSPs)
chr7 (85-122)||(33342946-33342983)
chr7 (1-52)||(42585556-42585607)
[»] chr2 (3 HSPs)
chr2 (79-119)||(15605298-15605338)
chr2 (172-222)||(21488866-21488917)
chr2 (85-120)||(26632433-26632468)
[»] chr5 (2 HSPs)
chr5 (86-120)||(23223857-23223891)
chr5 (78-120)||(34397228-34397270)
[»] chr1 (4 HSPs)
chr1 (86-120)||(9450333-9450367)
chr1 (86-120)||(17492635-17492669)
chr1 (86-119)||(5759967-5760000)
chr1 (89-121)||(42826720-42826752)
[»] chr8 (2 HSPs)
chr8 (85-122)||(33435344-33435381)
chr8 (84-120)||(36110557-36110593)
[»] scaffold0471 (1 HSPs)
scaffold0471 (84-120)||(425-461)


Alignment Details
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31824519 - 31824600
Alignment:
Q  1 aaatccaagctatgcaaatccttattcctccaaaaccgaagaagatgacaagctacagccaaatattccttccaatcaaaat 82  Q
    |||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  31824519 aaatccaaactatgcaaatccttgttcctccaaaaccaaagaagatgacaagctacagcccaatattccttccaatcaaaat 31824600  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 45012893 - 45012857
Alignment:
Q  83 taaaaaattactcttctcacttatgaaattgctcatt 119  Q
    |||||||||||||||||||||| ||||||||||||||    
T  45012893 taaaaaattactcttctcacttgtgaaattgctcatt 45012857  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 25258231 - 25258198
Alignment:
Q  86 aaaattactcttctcacttatgaaattgctcatt 119  Q
    |||||||||||||||||||||||||||| |||||    
T  25258231 aaaattactcttctcacttatgaaattgttcatt 25258198  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 7231238 - 7231202
Alignment:
Q  86 aaaattactcttctcacttatgaaattgctcattctc 122  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  7231238 aaaattactcttcttacttatgaaattgttcattctc 7231202  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 5244532 - 5244617
Alignment:
Q  135 caatgaattgtcgctcaacatttttcagcggcaccggcacttttaagattggttcaatcgtttttaagtcagttcaacctatctta 220  Q
    |||| |||| |||||| ||||||||||||||||| | || |||||||||||||||||||| |||||||||||||||||| ||||||    
T  5244532 caattaattttcgctcgacatttttcagcggcactgacatttttaagattggttcaatcgcttttaagtcagttcaaccgatctta 5244617  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 37398013 - 37397965
Alignment:
Q  175 ttttaagattggttcaatcg-tttttaagtcagttcaacctatcttaaa 222  Q
    ||||||||| |||||||||  ||||||||||||||||||| ||||||||    
T  37398013 ttttaagatcggttcaatcactttttaagtcagttcaaccaatcttaaa 37397965  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 33342983 - 33342946
Alignment:
Q  85 aaaaattactcttctcacttatgaaattgctcattctc 122  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  33342983 aaaaattactcttctcacttatggaattgctcattctc 33342946  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 42585556 - 42585607
Alignment:
Q  1 aaatccaagctatgcaaatccttattcctccaaaaccgaagaagatgacaag 52  Q
    ||||||||| ||||||  ||||||||||||||||||| ||||||||| ||||    
T  42585556 aaatccaagttatgcaggtccttattcctccaaaaccaaagaagatggcaag 42585607  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 15605298 - 15605338
Alignment:
Q  79 aaattaaaaaattactcttctcacttatgaaattgctcatt 119  Q
    ||||||||||||||| ||||||||||||||||||| |||||    
T  15605298 aaattaaaaaattacccttctcacttatgaaattgttcatt 15605338  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 21488866 - 21488917
Alignment:
Q  172 cacttttaagattggttcaatcgtttt-taagtcagttcaacctatcttaaa 222  Q
    |||||||||||| ||||||||| |||| ||||||||||||||| ||||||||    
T  21488866 cacttttaagatcggttcaatcattttttaagtcagttcaaccgatcttaaa 21488917  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 120
Target Start/End: Complemental strand, 26632468 - 26632433
Alignment:
Q  85 aaaaattactcttctcacttatgaaattgctcattc 120  Q
    ||||||||||||||||||||||||||||| ||||||    
T  26632468 aaaaattactcttctcacttatgaaattgttcattc 26632433  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 23223857 - 23223891
Alignment:
Q  86 aaaattactcttctcacttatgaaattgctcattc 120  Q
    |||| ||||||||||||||||||||||||||||||    
T  23223857 aaaaatactcttctcacttatgaaattgctcattc 23223891  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 34397270 - 34397228
Alignment:
Q  78 aaaattaaaaaattactcttctcacttatgaaattgctcattc 120  Q
    ||||||| ||||||||||||||||| |||||||||| ||||||    
T  34397270 aaaattagaaaattactcttctcacatatgaaattgttcattc 34397228  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 9450367 - 9450333
Alignment:
Q  86 aaaattactcttctcacttatgaaattgctcattc 120  Q
    |||||| ||||||||||||||||||||||||||||    
T  9450367 aaaattgctcttctcacttatgaaattgctcattc 9450333  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 17492635 - 17492669
Alignment:
Q  86 aaaattactcttctcacttatgaaattgctcattc 120  Q
    ||||||||||||||||||||||||||| |||||||    
T  17492635 aaaattactcttctcacttatgaaatttctcattc 17492669  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 5759967 - 5760000
Alignment:
Q  86 aaaattactcttctcacttatgaaattgctcatt 119  Q
    ||||||||||||||||||||||||||| ||||||    
T  5759967 aaaattactcttctcacttatgaaattactcatt 5760000  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 42826752 - 42826720
Alignment:
Q  89 attactcttctcacttatgaaattgctcattct 121  Q
    |||||||||||||||||| ||||||||||||||    
T  42826752 attactcttctcacttataaaattgctcattct 42826720  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 33435344 - 33435381
Alignment:
Q  85 aaaaattactcttctcacttatgaaattgctcattctc 122  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  33435344 aaaaattactcttctcacttatgaaattgtttattctc 33435381  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 36110557 - 36110593
Alignment:
Q  84 aaaaaattactcttctcacttatgaaattgctcattc 120  Q
    ||||||||||||||||||  |||||||||||||||||    
T  36110557 aaaaaattactcttctcatctatgaaattgctcattc 36110593  T

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Target: scaffold0471 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 425 - 461
Alignment:
Q  84 aaaaaattactcttctcacttatgaaattgctcattc 120  Q
    ||||||||||||||||||  |||||||||||||||||    
T  425 aaaaaattactcttctcatctatgaaattgctcattc 461  T

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