View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0316_low_1 (Length: 594)
Name: NF0316_low_1
Description: NF0316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0316_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 50408190 - 50408715
Alignment:
| Q |
1 |
aggtgatatatacaagaggtaccgatcagagcaggttgaagttgaaggagctacggctgagatgacggtggtccaaaatgacggcaagagaggaaaggaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50408190 |
aggtgatatatacaagaggtaccgatcagagcaggttgaagttgaaggagctacggctgagatgacggtggtccaaaatgacggcaagagaggaaaggaa |
50408289 |
T |
|
| Q |
101 |
------------acagtgatgtgatt----cattgatgtataggggttgaatgttgaatgttg----------attggtgtttcaatgttgatttataag |
174 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
50408290 |
gaagcaaaagctacagtgatgtgattgattcattgatgtataggggttgaatgttgaatgttgttgaatgttgattggtgtttgaatgttgatttataag |
50408389 |
T |
|
| Q |
175 |
caaatttcactaccactaggacgacaatgactaggaaccgaaaaacaa-ttcaatccatttttgtgtctatagtataggaccgctttctttttcaatacc |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50408390 |
caaatttcactaccactaggacgacaatgactaggaaccgaaaaaaaaattcaatccatttttgtgtctatagtataggaccgctttctttttcaatacc |
50408489 |
T |
|
| Q |
274 |
catctttcactgtaatcatgtgataaatatagggaatcaattataatatctaattttggctatacatgaatgaattttgtgtattcaactttggcatttt |
373 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50408490 |
catctttcactgtactcatgtgataaatatagggaatcaattataatatctaattttggctatacatgaatgaattttgtgtattcaactttggcatttt |
50408589 |
T |
|
| Q |
374 |
cttgcgtgcaacattttgctgtctcagctacgtgcttggtttggcaccatatagcaaattgttagttacttgtttaaagtaaattaacaatgatgattac |
473 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50408590 |
cttgtgtccaacattttgctgtctcagctacgtgcttggtttggcaccatatagcaaattgttagttacttgtttaaagtaaattaacaatgatgattac |
50408689 |
T |
|
| Q |
474 |
ttgtaaaaagaataaaaaatcacaat |
499 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
50408690 |
ttgtaaaaagaataaaaaatcacaat |
50408715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 41637834 - 41637755
Alignment:
| Q |
3 |
gtgatatatacaagaggtaccgatcagagcaggttgaagttgaaggagctacggctgagatgacggtggtccaaaatgac |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
41637834 |
gtgatatatacaagaggtaccgatcagagcaggtagaagttgaaggagcttcggatgagatgacggtggtccaaaatgac |
41637755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 41638642 - 41638695
Alignment:
| Q |
3 |
gtgatatatacaagaggtaccgatcagagcaggttgaagttgaaggagctacgg |
56 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
41638642 |
gtgatatatacaagaggtaccggtcagagcaggtagaagttgaaggagctacgg |
41638695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 388 times since January 2019
Visitors: 2761