View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0316_low_2 (Length: 375)

Name: NF0316_low_2
Description: NF0316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0316_low_2
NF0316_low_2
[»] chr5 (12 HSPs)
chr5 (1-184)||(3299482-3299665)
chr5 (1-184)||(3392375-3392558)
chr5 (49-184)||(1849914-1850049)
chr5 (49-184)||(1163690-1163822)
chr5 (46-184)||(39879763-39879898)
chr5 (46-184)||(40418232-40418367)
chr5 (46-184)||(38987654-38987789)
chr5 (46-184)||(39726367-39726502)
chr5 (242-332)||(3299334-3299424)
chr5 (242-332)||(3392227-3392317)
chr5 (46-184)||(39168795-39168930)
chr5 (46-183)||(39399809-39399943)
[»] chr4 (2 HSPs)
chr4 (46-184)||(25912292-25912427)
chr4 (52-118)||(44444772-44444838)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 3299665 - 3299482
Alignment:
Q  1 ggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299665 ggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatga 3299566  T
Q  101 gtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttttg 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299565 gtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttttg 3299482  T

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Target: chr5; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 3392558 - 3392375
Alignment:
Q  1 ggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392558 ggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatga 3392459  T
Q  101 gtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttttg 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392458 gtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttttg 3392375  T

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Target: chr5; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 49 - 184
Target Start/End: Complemental strand, 1850049 - 1849914
Alignment:
Q  49 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 148  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1850049 caggtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcaca 1849950  T
Q  149 cgagcaaccatggcatcagctaaacgatattttttg 184  Q
    |||||||| ||||||| |||||||||||||||||||    
T  1849949 cgagcaactatggcattagctaaacgatattttttg 1849914  T

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Target: chr5; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 49 - 184
Target Start/End: Original strand, 1163690 - 1163822
Alignment:
Q  49 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||| |||    
T  1163690 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgaca 1163786  T
Q  149 cgagcaaccatggcatcagctaaacgatattttttg 184  Q
    |||||||| ||||||| |||||||||||||||||||    
T  1163787 cgagcaactatggcattagctaaacgatattttttg 1163822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 39879898 - 39879763
Alignment:
Q  46 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  39879898 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 39879802  T
Q  146 acacgagcaaccatggcatcagctaaacgatattttttg 184  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  39879801 acacgagcaaccacagcatcagctaaacgatattttttg 39879763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 40418367 - 40418232
Alignment:
Q  46 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   | |||||||||||||||||||    
T  40418367 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaatatctttc 40418271  T
Q  146 acacgagcaaccatggcatcagctaaacgatattttttg 184  Q
    |||||||||||||  ||||||||||||| ||||||||||    
T  40418270 acacgagcaaccacagcatcagctaaacaatattttttg 40418232  T

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Target: chr5; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 38987789 - 38987654
Alignment:
Q  46 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 145  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  38987789 agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 38987693  T
Q  146 acacgagcaaccatggcatcagctaaacgatattttttg 184  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  38987692 acacgagcaaccacagcatcagctaaacgatattttttg 38987654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 39726502 - 39726367
Alignment:
Q  46 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 145  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  39726502 agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 39726406  T
Q  146 acacgagcaaccatggcatcagctaaacgatattttttg 184  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  39726405 acacgagcaaccacagcatcagctaaacgatattttttg 39726367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 242 - 332
Target Start/End: Complemental strand, 3299424 - 3299334
Alignment:
Q  242 tacaactcaataatcagcttcttcttctctttattctcctccaccaactcctctaattcctccttgaggttaataccaagaacaacatatt 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3299424 tacaactcaataatcagcttcttcttctctttattctcctccaccaactcctctaattcctccttgaggttaataccgagaacaacatatt 3299334  T

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Target: chr5; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 242 - 332
Target Start/End: Complemental strand, 3392317 - 3392227
Alignment:
Q  242 tacaactcaataatcagcttcttcttctctttattctcctccaccaactcctctaattcctccttgaggttaataccaagaacaacatatt 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3392317 tacaactcaataatcagcttcttcttctctttattctcctccaccaactcctctaattcctccttgaggttaataccgagaacaacatatt 3392227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 39168930 - 39168795
Alignment:
Q  46 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 145  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||| |||||||| ||||||||||||||||||   | ||||||||||| ||||| |    
T  39168930 agacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttcc 39168834  T
Q  146 acacgagcaaccatggcatcagctaaacgatattttttg 184  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  39168833 acacgagcaaccacggcatcagctaaccgatattttttg 39168795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 39399943 - 39399809
Alignment:
Q  46 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 145  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||||| |||||||||||||||||   | ||||||||||| || || |    
T  39399943 agacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaaaattttcc 39399847  T
Q  146 acacgagcaaccatggcatcagctaaacgatatttttt 183  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  39399846 acacgagcaaccacggcatcagctaaacggtatttttt 39399809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 46 - 184
Target Start/End: Original strand, 25912292 - 25912427
Alignment:
Q  46 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 145  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||   | |||||||||||||||||||    
T  25912292 agacaggtcataaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaatatctttc 25912388  T
Q  146 acacgagcaaccatggcatcagctaaacgatattttttg 184  Q
    |||||||||||||   |||||||||||||||||||||||    
T  25912389 acacgagcaaccacatcatcagctaaacgatattttttg 25912427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 44444772 - 44444838
Alignment:
Q  52 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 118  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44444772 gtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 44444838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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