View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0316_low_4 (Length: 305)
Name: NF0316_low_4
Description: NF0316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0316_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 50408214 - 50408006
Alignment:
| Q |
1 |
tcggtacctcttgtatatatcacctttataaaacttaattgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataata |
100 |
Q |
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| T |
50408214 |
tcggtacctcttgtatatatcacctttataaaacttatttgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataata |
50408115 |
T |
|
| Q |
101 |
atgaaagacaatctgaaacaacttgctcctacacaattcaattcctgacccaattttctttgtactcctttttcaatcaattgcctcttagcttctttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
50408114 |
atgaaagacaatctgaaacaacttgctcctacacaattcaattcctgacccaattttctttttactcctttttcaatcaattgcctcttagcttctttgt |
50408015 |
T |
|
| Q |
201 |
catataaat |
209 |
Q |
| |
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||||||||| |
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| T |
50408014 |
catataaat |
50408006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 50386178 - 50386078
Alignment:
| Q |
8 |
ctcttgtatatatcacctttataaaacttaattgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataataatgaaag |
107 |
Q |
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||||||||||| |||||||| |||||||| | || || ||||| ||||||||||||| || |||||||| || || || || |||||||||||||||| |
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| T |
50386178 |
ctcttgtatatgtcacctttgtaaaactttctggtcctagccaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtgataataatgaaag |
50386079 |
T |
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| Q |
108 |
a |
108 |
Q |
| |
|
| |
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|
| T |
50386078 |
a |
50386078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 50394601 - 50394484
Alignment:
| Q |
4 |
gtacctcttgtatatatcacctttataaaacttaattgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataataatg |
103 |
Q |
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||||||||||||||| |||||||| |||||||| | || || | ||| ||||||||||||| || |||||||| || || || || || ||||||||| |
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| T |
50394601 |
gtacctcttgtatatgtcacctttgtaaaactttctagtcctagacaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtaataataatg |
50394502 |
T |
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| Q |
104 |
aaagacaatctgaaacaa |
121 |
Q |
| |
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||||| || |||||||| |
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| T |
50394501 |
aaagataacttgaaacaa |
50394484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 41637862 - 41638051
Alignment:
| Q |
20 |
tcacctttataaaacttaattgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataataatgaaagacaatctgaaac |
119 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
41637862 |
tcacgtttataaaacttaattgttctagccactaaaataagtgaaataatggcaccaaacaaagtagctacagtgataataatgaaagacaatttgaaac |
41637961 |
T |
|
| Q |
120 |
aacttgctcctacacaattcaattcctgacccaattttctttgtactcctttttcaatcaattgcctcttagcttctttgtcatataaat |
209 |
Q |
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| T |
41637962 |
aacttgctcctgcacaattcaattcctgacccaattttctttcttctccttttccaatcaattgcctcttagcttctttgtcatataaat |
41638051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 39628064 - 39628197
Alignment:
| Q |
1 |
tcggtacctcttgtatatatcacctttataaaacttaattgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataata |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| | || ||||| | |||||||||| |||||||||| |||||||||||||| |
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| T |
39628064 |
tcggtacctcttgtatatatcacgtttataaaacttaattgttctagtcaacaaaattactgaaataatgacaccaaacaagttagctgcagtgatagac |
39628163 |
T |
|
| Q |
101 |
atgaaagacaatctgaaacaacttgctcctacac |
134 |
Q |
| |
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|||||||||||| |||||||||||||||| |||| |
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|
| T |
39628164 |
atgaaagacaatttgaaacaacttgctcccacac |
39628197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 41638221 - 41638119
Alignment:
| Q |
41 |
gttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcag---tgataataatgaaagacaatctgaaacaacttgctcctacacaat |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||||| || ||||||||||| |
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| T |
41638221 |
gttctggccactaaaataagtgaaataatggcaccaaacaaagtagccagagtgatgatgataatgaaagacaatttgaaacaacgtgttcctacacaat |
41638122 |
T |
|
| Q |
138 |
tca |
140 |
Q |
| |
|
||| |
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| T |
41638121 |
tca |
41638119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 41637812 - 41637847
Alignment:
| Q |
1 |
tcggtacctcttgtatatatcacctttataaaactt |
36 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |
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| T |
41637812 |
tcggtacctcttgtatatatcacgtttataaaactt |
41637847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 41638663 - 41638631
Alignment:
| Q |
2 |
cggtacctcttgtatatatcacctttataaaac |
34 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |
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| T |
41638663 |
cggtacctcttgtatatatcacgtttataaaac |
41638631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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