View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0316_low_6 (Length: 250)

Name: NF0316_low_6
Description: NF0316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0316_low_6
NF0316_low_6
[»] chr3 (7 HSPs)
chr3 (73-217)||(9827393-9827537)
chr3 (1-152)||(9820526-9820677)
chr3 (77-152)||(17152491-17152566)
chr3 (1-72)||(6277114-6277185)
chr3 (77-152)||(3516150-3516225)
chr3 (77-152)||(8596723-8596798)
chr3 (78-146)||(10755535-10755603)
[»] chr2 (1 HSPs)
chr2 (76-152)||(21966059-21966135)
[»] chr7 (3 HSPs)
chr7 (76-152)||(37074270-37074346)
chr7 (77-152)||(588250-588325)
chr7 (77-152)||(12123052-12123127)
[»] chr4 (3 HSPs)
chr4 (76-152)||(15647747-15647823)
chr4 (77-152)||(17825462-17825537)
chr4 (77-152)||(23156831-23156906)
[»] chr6 (2 HSPs)
chr6 (77-152)||(2895669-2895744)
chr6 (77-152)||(18294076-18294151)
[»] chr5 (1 HSPs)
chr5 (77-152)||(11267491-11267566)
[»] chr1 (1 HSPs)
chr1 (77-152)||(49371233-49371308)
[»] scaffold0032 (1 HSPs)
scaffold0032 (80-152)||(57085-57157)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 73 - 217
Target Start/End: Original strand, 9827393 - 9827537
Alignment:
Q  73 gtggttggattatggagtgtgttacaactgctacagcatcagggttagtgaatggttgtccgaccgatgagtttcattttaaaaagtcgcactctaatgc 172  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9827393 gtggttggattatggagtgtgttacaactgctacagcatcagtgttagtgaatggttgtctgaccgatgagtttcattttaaaaagtcgcactctaatgc 9827492  T
Q  173 cacatgatacattgaactctaatgttatttctggatgacggagtt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  9827493 cacatgatacattgaactctaatgttatttctggatgacggagtt 9827537  T

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Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 9820677 - 9820526
Alignment:
Q  1 acaacacaaaaaacggaaacacataccattattttatgtaatagagaactcacacattttaaatctgaagaagtggttggattatggagtgtgttacaac 100  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9820677 acaacacaaaaaactgaaacacataccattattttatgtaatatagaactcacacattttaaatctgaagaagtggttggattatggagtgtgttacaac 9820578  T
Q  101 tgctacagcatcagggttagtgaatggttgtccgaccgatgagtttcatttt 152  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  9820577 tgcaacagcatcagtgttagtgaatggttgtccgaccgatgagtttcatttt 9820526  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 17152491 - 17152566
Alignment:
Q  77 ttggattatggagtgtgttacaactgctacagcatcagggttagtgaatggttgtccgaccgatgagtttcatttt 152  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17152491 ttggattatggagtgtgttacaactgctacagcatcagtgttagtgaatggttgtccgaccgatgagtttcatttt 17152566  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 6277114 - 6277185
Alignment:
Q  1 acaacacaaaaaacggaaacacataccattattttatgtaatagagaactcacacattttaaatctgaagaa 72  Q
    |||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  6277114 acaacacaaaaaactgaaacatataccattattttatgtaatatagaactcacacattttaaatttgaagaa 6277185  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 3516225 - 3516150
Alignment:
Q  77 ttggattatggagtgtgttacaactgctacagcatcagggttagtgaatggttgtccgaccgatgagtttcatttt 152  Q
    ||||||||||||||| |||||||| |||||||| || | | |||||||||| |||||||| |||||||||||||||    
T  3516225 ttggattatggagtgcgttacaacggctacagcttctgtgctagtgaatggctgtccgactgatgagtttcatttt 3516150  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 8596798 - 8596723
Alignment:
Q  77 ttggattatggagtgtgttacaactgctacagcatcagggttagtgaatggttgtccgaccgatgagtttcatttt 152  Q
    |||||||||||||||||||||||| |||||  ||||||  ||||| |||||||||||||| |||||||| ||||||    
T  8596798 ttggattatggagtgtgttacaacggctacgacatcagttttagttaatggttgtccgacagatgagttccatttt 8596723  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 10755603 - 10755535
Alignment:
Q  78 tggattatggagtgtgttacaactgctacagcatcagggttagtgaatggttgtccgaccgatgagttt 146  Q
    ||||||||||||||| ||||||| || ||  |||||| |||||| ||||| |||||||| |||||||||    
T  10755603 tggattatggagtgtattacaacggcaacgacatcagtgttagttaatgggtgtccgacagatgagttt 10755535  T

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Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 21966135 - 21966059
Alignment:
Q  76 gttggattatggagtgtgttacaactgctacagcatcagggttagtgaatggttgtccgaccgatgagtttcatttt 152  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  21966135 gttggattatggagtgtgttacaactgctacagcatcagtgttagtgaatggttgcccgaccgatgagtttcatttt 21966059  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 37074270 - 37074346
Alignment:
Q  76 gttggattatggagtgtgttacaactgctacagcatcagggttagtgaatggttgtccgaccgatgagtttcatttt 152  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||||||||||||||||    
T  37074270 gttggattatggagtgtgttacaactgctacagcttcagtgttagtgaatggttgctcgaccgatgagtttcatttt 37074346  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 588325 - 588250
Alignment:
Q  77 ttggattatggagtgtgttacaactgctacagcatcagggttagtgaatggttgtccgaccgatgagtttcatttt 152  Q
    |||||||||||||||||| ||||| |||||| |||||| |||||| ||||| |||||||| |||||||||||||||    
T  588325 ttggattatggagtgtgtcacaacggctacaacatcagtgttagttaatgggtgtccgactgatgagtttcatttt 588250  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 12123127 - 12123052
Alignment:
Q  77 ttggattatggagtgtgttacaactgctacagcatcagggttagtgaatggttgtccgaccgatgagtttcatttt 152  Q
    ||||||||||||||| |||||||| |||||||| || | | ||||||||||||||||| | |||||||||||||||    
T  12123127 ttggattatggagtgcgttacaacggctacagcttccgtgctagtgaatggttgtccggctgatgagtttcatttt 12123052  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 15647747 - 15647823
Alignment:
Q  76 gttggattatggagtgtgttacaactgctacagcatcagggttagtgaatggttgtccgaccgatgagtttcatttt 152  Q
    |||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| ||||||||||||||||||    
T  15647747 gttggattatggagtgtgttaccactgctacagcatctgtgttagtgaatggttgtccaaccgatgagtttcatttt 15647823  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 17825462 - 17825537
Alignment:
Q  77 ttggattatggagtgtgttacaactgctacagcatcagggttagtgaatggttgtccgaccgatgagtttcatttt 152  Q
    |||||||||||||||| ||||||| |||||||||||||  ||||| ||||||||||||||  ||||||| ||||||    
T  17825462 ttggattatggagtgtattacaacggctacagcatcagtattagtaaatggttgtccgacaaatgagttccatttt 17825537  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 23156831 - 23156906
Alignment:
Q  77 ttggattatggagtgtgttacaactgctacagcatcagggttagtgaatggttgtccgaccgatgagtttcatttt 152  Q
    ||||||||||||||| ||| |||| |||||||| || | | ||||||||||||||||||| |||||||||||||||    
T  23156831 ttggattatggagtgcgttgcaacggctacagcttccgtgctagtgaatggttgtccgactgatgagtttcatttt 23156906  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 2895744 - 2895669
Alignment:
Q  77 ttggattatggagtgtgttacaactgctacagcatcagggttagtgaatggttgtccgaccgatgagtttcatttt 152  Q
    ||||||||||||||| ||||||||||||||||| ||||   ||||||||||||| ||||| |||||||||||||||    
T  2895744 ttggattatggagtgcgttacaactgctacagcttcagtactagtgaatggttgcccgactgatgagtttcatttt 2895669  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 18294076 - 18294151
Alignment:
Q  77 ttggattatggagtgtgttacaactgctacagcatcagggttagtgaatggttgtccgaccgatgagtttcatttt 152  Q
    ||||||||||||||| |||||||| |||||||| || | | |||||||||||||||| || ||||||||| |||||    
T  18294076 ttggattatggagtgcgttacaacggctacagcttctgtgctagtgaatggttgtccaactgatgagttttatttt 18294151  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 11267566 - 11267491
Alignment:
Q  77 ttggattatggagtgtgttacaactgctacagcatcagggttagtgaatggttgtccgaccgatgagtttcatttt 152  Q
    |||||||||||| ||||||||||| |||||  |||||| | |||| |||||||||||||| |||||||||||||||    
T  11267566 ttggattatggaatgtgttacaacagctacgacatcagtgctagtaaatggttgtccgactgatgagtttcatttt 11267491  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 49371308 - 49371233
Alignment:
Q  77 ttggattatggagtgtgttacaactgctacagcatcagggttagtgaatggttgtccgaccgatgagtttcatttt 152  Q
    |||||||||||||||||||||| | ||||| |||||||  ||||| |||||||||||||| |||||||| ||||||    
T  49371308 ttggattatggagtgtgttacagcggctacggcatcagttttagtaaatggttgtccgacagatgagttccatttt 49371233  T

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Target: scaffold0032 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 57085 - 57157
Alignment:
Q  80 gattatggagtgtgttacaactgctacagcatcagggttagtgaatggttgtccgaccgatgagtttcatttt 152  Q
    ||||||||||||||||||||  |||||  |||||| |||||| |||||||| ||||| |||||||||||||||    
T  57085 gattatggagtgtgttacaatggctacgacatcagtgttagtaaatggttgcccgactgatgagtttcatttt 57157  T

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