View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0316_low_8 (Length: 236)
Name: NF0316_low_8
Description: NF0316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0316_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 13473299 - 13473444
Alignment:
| Q |
1 |
tattttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatgaagagagtcgtcaacaactaacactaagaaataacatat |
100 |
Q |
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| T |
13473299 |
tattttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatgaagagagttgtcaacaactatcactaaaaaataacatac |
13473398 |
T |
|
| Q |
101 |
gtcgtttgagttttaaacaatttttaagtattagtccttgatgatg |
146 |
Q |
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| T |
13473399 |
gtcgtttgaattttaaacaatttttaagtaacagtcctcgatgatg |
13473444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 24300920 - 24300871
Alignment:
| Q |
13 |
ttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatga |
62 |
Q |
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| T |
24300920 |
ttttaatcaaaccggatttaattaagtcaatatttcaatcataaaaatga |
24300871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 24372395 - 24372444
Alignment:
| Q |
13 |
ttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatga |
62 |
Q |
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| T |
24372395 |
ttttaatcaaaccggatttaattaagtcaatatttcaatcataaaaatga |
24372444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 6291670 - 6291718
Alignment:
| Q |
3 |
ttttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaat |
51 |
Q |
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| T |
6291670 |
ttttatgttgttttaatcaaaatgatatcaattaaatcattatttcaat |
6291718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 16952570 - 16952479
Alignment:
| Q |
1 |
tattttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatgaagagagtcgtcaacaactaacactaagaaa |
92 |
Q |
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| T |
16952570 |
tattttccgttgttttaatcaaaccggtttcaattaagtcactatttcaatcttaaaaatgaggaggatcattaacatctatcactaagaaa |
16952479 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 44382624 - 44382676
Alignment:
| Q |
8 |
tgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaat |
60 |
Q |
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| T |
44382624 |
tgtcgttatgatcaaactgatatcaattaaatcattatttcaatcataaaaat |
44382676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 3584330 - 3584380
Alignment:
| Q |
12 |
gttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatga |
62 |
Q |
| |
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|
| T |
3584330 |
gttttaatcaaactggtatcaattaaatcattatttcaatcttaaaaatga |
3584380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 24409310 - 24409258
Alignment:
| Q |
12 |
gttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatgaag |
64 |
Q |
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||||||||||||| || |||||||||||||||||| |||| ||||| ||||| |
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|
| T |
24409310 |
gttttaatcaaactaatatcaattaaatcattatttgaatcttaaaattgaag |
24409258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 51046824 - 51046872
Alignment:
| Q |
12 |
gttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaat |
60 |
Q |
| |
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|||||||||||| ||| |||||||||||||||||||||| ||||||| |
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| T |
51046824 |
gttttaatcaaattgataacaattaaatcattatttcaatcgtaaaaat |
51046872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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