View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0319_high_11 (Length: 299)

Name: NF0319_high_11
Description: NF0319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0319_high_11
NF0319_high_11
[»] chr7 (7 HSPs)
chr7 (1-206)||(17734691-17734895)
chr7 (5-205)||(17743935-17744145)
chr7 (5-123)||(17716644-17716762)
chr7 (5-123)||(16729584-16729702)
chr7 (5-123)||(17706656-17706774)
chr7 (5-176)||(16720711-16720884)
chr7 (5-176)||(17697725-17697898)
[»] chr8 (1 HSPs)
chr8 (12-60)||(21465819-21465867)
[»] chr4 (1 HSPs)
chr4 (15-66)||(37147601-37147652)
[»] chr3 (3 HSPs)
chr3 (12-66)||(47398188-47398242)
chr3 (12-63)||(5155454-5155505)
chr3 (13-63)||(46543301-46543351)
[»] chr2 (2 HSPs)
chr2 (17-66)||(20143701-20143750)
chr2 (17-66)||(20169760-20169809)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 7e-89; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 17734691 - 17734895
Alignment:
Q  1 tgcctgtctcacgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttgcttcaaacaactcatgactactgatttcaaagtgactcttgctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  17734691 tgcctgtctcacgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttccttcaaacaactcatgactactgatttcaaagcgactcttgctg 17734790  T
Q  101 ttgttgatttcgtcaacaaggtaatcatacataaaataactcacaaattagggtttgaagtttagtgttatgatatttgtttttagcagacaaattgata 200  Q
     |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| |||||    
T  17734791 ctgttgatttcatcaacaaggtactcatacataaaataactcacaaattagggtttgaagtttagtgttgtgata-ttctttttagcagacaaagtgata 17734889  T
Q  201 aaaaac 206  Q
    ||||||    
T  17734890 aaaaac 17734895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 17743935 - 17744145
Alignment:
Q  5 tgtctcacgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttgcttcaaacaactcatgactactgatttcaaagtgactcttgctgttgt 104  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| ||| |||    
T  17743935 tgtcttacgtcaatggtgtgtgggttgaaaaatcacttcctcttcaaccttccttcaaacaactcatgactactgatttcgaagcgactctttctgctgt 17744034  T
Q  105 tgatttcgtcaacaaggtaatcatacat-----------aaaataactcacaaattagggtttgaagtttagtgttatgatatttgtttttagcagacaa 193  Q
    ||||||||||||||||||| |||| | |            |||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||| |    
T  17744035 tgatttcgtcaacaaggtactcatgcttttatttattcataaataactcacaaattagggtttgaagtttagcgttatgatattt-tttttagtagacta 17744133  T
Q  194 attgataaaaaa 205  Q
    | ||||||||||    
T  17744134 agtgataaaaaa 17744145  T

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Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 17716644 - 17716762
Alignment:
Q  5 tgtctcacgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttgcttcaaacaactcatgactactgatttcaaagtgactcttgctgttgt 104  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| ||||  ||||||||||  ||    
T  17716644 tgtcttacgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttcctttaaacaacttatgactactgattttaaagctactcttgctgaagt 17716743  T
Q  105 tgatttcgtcaacaaggta 123  Q
    |||||||||||||||||||    
T  17716744 tgatttcgtcaacaaggta 17716762  T

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Target: chr7; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 16729584 - 16729702
Alignment:
Q  5 tgtctcacgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttgcttcaaacaactcatgactactgatttcaaagtgactcttgctgttgt 104  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| ||||  ||||||||||  ||    
T  16729584 tgtcttacgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttcctttaaacaacttatgactactgattttaaagctactcttgctgaagt 16729683  T
Q  105 tgatttcgtcaacaaggta 123  Q
    ||||||| |||||||||||    
T  16729684 tgatttcctcaacaaggta 16729702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 17706656 - 17706774
Alignment:
Q  5 tgtctcacgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttgcttcaaacaactcatgactactgatttcaaagtgactcttgctgttgt 104  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| ||||  ||||||||||  ||    
T  17706656 tgtcttacgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttcctttaaacaacttatgactactgattttaaagctactcttgctgaagt 17706755  T
Q  105 tgatttcgtcaacaaggta 123  Q
    ||||||| |||||||||||    
T  17706756 tgatttcctcaacaaggta 17706774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 16720711 - 16720884
Alignment:
Q  5 tgtctcacgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttgcttcaaacaactcatgactactgatttcaaagtgactcttgctgttgt 104  Q
    ||||| |||||||||||||||||||||||||  || ||||||||||||||| |||||||||||| |||| ||||||||||||||   || |||||| |||    
T  16720711 tgtcttacgtcaatggtgtgtgggttgaacagacaattcctcttcaaccttccttcaaacaacttatgaatactgatttcaaagctgcttttgctgctgt 16720810  T
Q  105 tgatttcgtcaacaaggtaatcatacataaaataa--ctcacaaattagggtttgaagtttagtgttatgatat 176  Q
    ||||||||||||||||||| | || | |  | |    ||||||| |||||||||||||||||||||||| ||||    
T  16720811 tgatttcgtcaacaaggtactaatgcttttatttgttctcacaagttagggtttgaagtttagtgttatcatat 16720884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 17697725 - 17697898
Alignment:
Q  5 tgtctcacgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttgcttcaaacaactcatgactactgatttcaaagtgactcttgctgttgt 104  Q
    ||||| |||||||||||||||||||||||||  || ||||||||||||||| |||||||||||| |||| ||||||||||||||   || |||||| |||    
T  17697725 tgtcttacgtcaatggtgtgtgggttgaacagacaattcctcttcaaccttccttcaaacaacttatgaatactgatttcaaagctgcttttgctgctgt 17697824  T
Q  105 tgatttcgtcaacaaggtaatcatacataaaataa--ctcacaaattagggtttgaagtttagtgttatgatat 176  Q
    ||||||||||||||||||| | || | |  | |    ||||||| |||||||||||||||||||||||| ||||    
T  17697825 tgatttcgtcaacaaggtactaatgcttttatttgttctcacaagttagggtttgaagtttagtgttatcatat 17697898  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 21465867 - 21465819
Alignment:
Q  12 cgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttgcttc 60  Q
    |||||||||| |||||||||||||||||||| |||||||||||| ||||    
T  21465867 cgtcaatggtatgtgggttgaacaatcactttctcttcaaccttccttc 21465819  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 37147601 - 37147652
Alignment:
Q  15 caatggtgtgtgggttgaacaatcacttcctcttcaaccttgcttcaaacaa 66  Q
    ||||||||||||| |||||||||||||| ||||||||| || ||||||||||    
T  37147601 caatggtgtgtggattgaacaatcactttctcttcaacattccttcaaacaa 37147652  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 47398242 - 47398188
Alignment:
Q  12 cgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttgcttcaaacaa 66  Q
    ||||||||| ||||||||||||||| | ||| |||||||||||| ||||||||||    
T  47398242 cgtcaatggcgtgtgggttgaacaaaccctttctcttcaaccttccttcaaacaa 47398188  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 5155454 - 5155505
Alignment:
Q  12 cgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttgcttcaaa 63  Q
    |||||||||||| |||||||||||| | ||| |||||||||||| |||||||    
T  5155454 cgtcaatggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaa 5155505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 46543301 - 46543351
Alignment:
Q  13 gtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttgcttcaaa 63  Q
    ||||||||||| |||||||||||||||||| || |||||| || |||||||    
T  46543301 gtcaatggtgtatgggttgaacaatcacttacttttcaacattccttcaaa 46543351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 20143701 - 20143750
Alignment:
Q  17 atggtgtgtgggttgaacaatcacttcctcttcaaccttgcttcaaacaa 66  Q
    ||||||| |||||||||||| | ||| |||||||||||| ||||||||||    
T  20143701 atggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaacaa 20143750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 20169809 - 20169760
Alignment:
Q  17 atggtgtgtgggttgaacaatcacttcctcttcaaccttgcttcaaacaa 66  Q
    ||||||| |||||||||||| | ||| |||||||||||| ||||||||||    
T  20169809 atggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaacaa 20169760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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