View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0319_high_4 (Length: 460)
Name: NF0319_high_4
Description: NF0319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0319_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 9 - 363
Target Start/End: Complemental strand, 2662867 - 2662513
Alignment:
| Q |
9 |
agcagagacaagtatattcaaagtatttgagaaggcaagagcagaaactcgtttagaatgaccctcaagcttttgaacctaacataaatgaatgatacat |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2662867 |
agcagaaacaagtatattcaaagtatttgagaaggcaagagcagaaactcgtttagaatgaccctcaagcttttgaacctaacataaatgaatgatacat |
2662768 |
T |
|
| Q |
109 |
gaagttaattagtttaattatcctttaaaacatgtaattataatgaatgtctttattgaatgaagaaagatatatacctcatcatgcttgtgaatattgt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2662767 |
gaagttaattagtttaattatcctttaaaacatgtaattataatgaatgtctttattgaatgaagaaagatatatacctcatcatgcttgtgaatattgt |
2662668 |
T |
|
| Q |
209 |
atacacgtatactggagtcatccaagccaataagaaaagtattattatctttaggatagaaggttagacttgttaccattggtggaggtggcatgaaagt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2662667 |
atacacgtatactggagtcatccaagccaataagaaaagtattattatctttaggatagaaggcaagacttgttaccattggtggaggtggcatgaaagt |
2662568 |
T |
|
| Q |
309 |
tactagagtctgcaattattatataatgtgtgacatgattagttaaatcatatta |
363 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2662567 |
tactagagtctgcaattattatataatgtgtgacatgattagttaaatcatatta |
2662513 |
T |
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