View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0319_high_5 (Length: 426)
Name: NF0319_high_5
Description: NF0319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0319_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 190 - 422
Target Start/End: Original strand, 34352270 - 34352502
Alignment:
| Q |
190 |
atacttcaatcacaaccgtcgtgcaaatttttagcaccatccacatactatgtcgccgccgtcgtgcaaagaggttctatcgccgccgtcatcaaagctt |
289 |
Q |
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| T |
34352270 |
atacttcaatcgcagccgtcgtgcaaatttttagcaccatccacatactatgtcgctgccgtcgtgcaaagaggttctatcgccgccgtcatcaaagctt |
34352369 |
T |
|
| Q |
290 |
atgttgtcatctctgtagcaaagcttatgtcatcgcaacgctgccgaatcaaaacccctatcagtatcgtttccttttcttcattattcttgctttgctt |
389 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
34352370 |
atgttgtcatctctgtcgcaaagcttatgtcatcgcaacgctgccgaatcaaaaccccaatcagtatcgtttctttttcttcattattcttgctttgctt |
34352469 |
T |
|
| Q |
390 |
gcagatactctcttcagtttgttctgtgctgct |
422 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
34352470 |
gcagatactctcttcagtttgttctgttctgct |
34352502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 28 - 181
Target Start/End: Original strand, 34352094 - 34352246
Alignment:
| Q |
28 |
atatatttgctgattttcatacatcagcaaccaattaaatggattggatctaaaactaaattataaaaatcggttgaaaaacgattaaaccaatttacaa |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34352094 |
atatatttgctgattttcatacatcagcaaccaattaaatggattggatataaaactaaattataaaaatcggttgaaaaacgattaaaccaatttaaaa |
34352193 |
T |
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| Q |
128 |
ctagttattaacaccatccatnnnnnnnnngccacacacaattgaacctcgtaa |
181 |
Q |
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| T |
34352194 |
ctagttattaacaccatccat-aaaaaaaagccacacacaattgaacctcgtaa |
34352246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 205 - 347
Target Start/End: Complemental strand, 35935154 - 35935012
Alignment:
| Q |
205 |
ccgtcgtgcaaatttttagcaccatccacatactatgtcgccgccgtcgtgcaaagaggttctatcgccgccgtcatcaaagcttatgttgtcatctctg |
304 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |
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| T |
35935154 |
ccgtcgtgcaactttttagcaccatccacatactctgtcgccgccgtcgtgcaaagagtttctatcgccgtcgtcatcaaagcttttgttgtcatctctg |
35935055 |
T |
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| Q |
305 |
tagcaaagcttatgtcatcgcaacgctgccgaatcaaaacccc |
347 |
Q |
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| T |
35935054 |
tagcaaaccttatgtcatcgcaacgctgccgaatcaaaacccc |
35935012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 35934819 - 35934746
Alignment:
| Q |
349 |
atcagtatcgtttccttttcttcattattcttgctttgcttgcagatactctcttcagtttgttctgtgctgct |
422 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
35934819 |
atcagaatcgtttccttttcttcattattcttgctttgcttgcagatactctgttcagtttgttctgttctgct |
35934746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 35935296 - 35935226
Alignment:
| Q |
83 |
ctaaattataaaaatcggttgaaaaacgattaaaccaattta-----caactagttattaacaccatccat |
148 |
Q |
| |
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||||||||| |||| |||||||||||| ||||||||| |||| ||||||||||||||||||||||| |
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| T |
35935296 |
ctaaattatcaaaaccggttgaaaaacaattaaaccagtttaaaactaaactagttattaacaccatccat |
35935226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 4608398 - 4608306
Alignment:
| Q |
56 |
aaccaattaaatggattggatctaaaactaaattataaaaatcggttgaaaaacgattaaaccaatttacaactagttattaacaccatccat |
148 |
Q |
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| T |
4608398 |
aaccaataaaatggattggatctgaaactaaattatcaaaatcggttacaaaacaattaaaccagtttaaaaccggttattaacaccagccat |
4608306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 4608207 - 4608137
Alignment:
| Q |
206 |
cgtcgtgcaaatttttagcaccatccacatactatgtcgccgccgtcgtgcaaagaggttctatcgccgccgtc |
279 |
Q |
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|||||||||| || ||||||||||||||||||| | |||| ||| ||||||||||||| ||||||||||||| |
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| T |
4608207 |
cgtcgtgcaagttgttagcaccatccacatact---ttgccgtcgtagtgcaaagaggttatatcgccgccgtc |
4608137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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