View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0319_high_7 (Length: 349)

Name: NF0319_high_7
Description: NF0319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0319_high_7
NF0319_high_7
[»] chr2 (7 HSPs)
chr2 (1-257)||(12101068-12101324)
chr2 (34-257)||(5114944-5115167)
chr2 (70-212)||(20380939-20381081)
chr2 (70-178)||(25976605-25976713)
chr2 (95-164)||(15702107-15702176)
chr2 (78-164)||(21152356-21152442)
chr2 (95-160)||(15717417-15717482)
[»] chr1 (6 HSPs)
chr1 (1-257)||(11780869-11781125)
chr1 (34-202)||(13311063-13311231)
chr1 (34-257)||(10425316-10425539)
chr1 (55-257)||(1625549-1625751)
chr1 (70-149)||(30730687-30730766)
chr1 (68-202)||(21805376-21805510)
[»] chr3 (6 HSPs)
chr3 (4-257)||(19829686-19829939)
chr3 (4-257)||(16313235-16313488)
chr3 (4-257)||(18494229-18494482)
chr3 (73-257)||(14679722-14679906)
chr3 (68-191)||(3582226-3582349)
chr3 (103-151)||(20971973-20972021)
[»] chr5 (7 HSPs)
chr5 (4-257)||(19070131-19070384)
chr5 (4-257)||(5782649-5782902)
chr5 (34-178)||(11722491-11722635)
chr5 (1-257)||(17763241-17763497)
chr5 (4-178)||(21899689-21899863)
chr5 (95-151)||(35340140-35340196)
chr5 (68-164)||(13644474-13644570)
[»] chr4 (13 HSPs)
chr4 (4-257)||(33042085-33042338)
chr4 (4-178)||(8668628-8668802)
chr4 (7-178)||(10674740-10674911)
chr4 (7-178)||(10888380-10888551)
chr4 (34-120)||(10697303-10697389)
chr4 (34-120)||(10911072-10911158)
chr4 (6-178)||(1930216-1930388)
chr4 (68-170)||(17939282-17939384)
chr4 (104-157)||(39915352-39915405)
chr4 (79-170)||(15443096-15443187)
chr4 (116-178)||(10693664-10693726)
chr4 (116-178)||(10907430-10907492)
chr4 (61-158)||(7188285-7188382)
[»] chr8 (5 HSPs)
chr8 (4-185)||(21591336-21591517)
chr8 (4-185)||(14411513-14411694)
chr8 (4-230)||(17458628-17458850)
chr8 (34-185)||(23600121-23600272)
chr8 (95-160)||(18694085-18694150)
[»] scaffold0363 (1 HSPs)
scaffold0363 (4-185)||(7017-7198)
[»] chr7 (2 HSPs)
chr7 (34-185)||(3729273-3729424)
chr7 (70-178)||(20942402-20942510)
[»] chr6 (5 HSPs)
chr6 (1-213)||(11776975-11777194)
chr6 (47-151)||(13734685-13734789)
chr6 (69-151)||(18308363-18308445)
chr6 (95-151)||(33312633-33312689)
chr6 (70-158)||(3548447-3548535)
[»] scaffold0012 (1 HSPs)
scaffold0012 (4-178)||(61325-61499)
[»] scaffold0093 (1 HSPs)
scaffold0093 (4-178)||(10299-10473)
[»] scaffold0125 (2 HSPs)
scaffold0125 (73-257)||(31321-31505)
scaffold0125 (73-257)||(40632-40816)
[»] scaffold0061 (1 HSPs)
scaffold0061 (70-150)||(38063-38143)
[»] scaffold0017 (1 HSPs)
scaffold0017 (70-150)||(160636-160716)
[»] scaffold0490 (1 HSPs)
scaffold0490 (73-178)||(12071-12176)
[»] scaffold0292 (1 HSPs)
scaffold0292 (70-151)||(19448-19529)
[»] scaffold0062 (3 HSPs)
scaffold0062 (95-164)||(51019-51088)
scaffold0062 (95-164)||(63558-63627)
scaffold0062 (95-160)||(65975-66040)
[»] scaffold0238 (1 HSPs)
scaffold0238 (104-191)||(1469-1556)
[»] scaffold0416 (1 HSPs)
scaffold0416 (68-151)||(9234-9317)
[»] scaffold0063 (1 HSPs)
scaffold0063 (34-91)||(59562-59619)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 12101068 - 12101324
Alignment:
Q  1 aatctcaagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttg 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  12101068 aatctcaagtcgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagcagactcatttatcgctttggattcgactggttg 12101167  T
Q  101 agttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12101168 agttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcactgacaagaaaccacacttt 12101267  T
Q  201 tgtccactatgcacagatcctagttgacattgacctgtctaagagagcttatgatga 257  Q
    || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12101268 tggccactatgcacggatcctagttgacattgacctgtctaagagagcttatgatga 12101324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 34 - 257
Target Start/End: Original strand, 5114944 - 5115167
Alignment:
Q  34 tggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacat 133  Q
    |||||||| ||| |||||||||| ||||||||  ||||||||||||| ||||||||||   |||| ||||||||||| ||||||||| |||||||||| |    
T  5114944 tggaccaaggatttcaaatatctggctcagaaacagactcatgtatctctttggattcgcttggtggagttaccgcaggagtattggtgggagagaacct 5115043  T
Q  134 tgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttgacattga 233  Q
    |||| ||||| ||||||| |||||| |||||||| ||||| |||| ||||||| ||||||  |||||||  || |||||    || || || ||||||||    
T  5115044 tgaaggaaattgcaagtgcggttggtactccgattgacatagatggaccgacacgaaaccgtacttttggacattatgctagaattcttgtcgacattga 5115143  T
Q  234 cctgtctaagagagcttatgatga 257  Q
     || ||||||||||||||||||||    
T  5115144 tctttctaagagagcttatgatga 5115167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 212
Target Start/End: Original strand, 20380939 - 20381081
Alignment:
Q  70 actcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatag 169  Q
    |||||||| |||||||||||||   |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||   ||||||| || ||||    
T  20380939 actcatgtttcgctttggattcgtttggtggagttaccgcaagagtattggcgggagcgaacattgaaggaaatagcaagtgcatttggcacccctatag 20381038  T
Q  170 acattgatgcaccgacaagaaaccacacttttgtccactatgc 212  Q
    | || || |  || ||  |||||||||||||||  ||||||||    
T  20381039 atatcgacgagccaactcgaaaccacacttttggtcactatgc 20381081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 178
Target Start/End: Complemental strand, 25976713 - 25976605
Alignment:
Q  70 actcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatag 169  Q
    |||||||| |||||||||||||   |||| ||||||||||||||||||||||||||  |||| ||||| |||||||| ||||  || ||||| || || |    
T  25976713 actcatgtttcgctttggattcgcttggtggagttaccgcaagagtattggcgggaacgaaccttgaaggaaatagctagtgccgtgggcacgcctattg 25976614  T
Q  170 acattgatg 178  Q
    |||||||||    
T  25976613 acattgatg 25976605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 15702107 - 15702176
Alignment:
Q  95 tggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactcc 164  Q
    |||||||||||||||| |||||||||||||| ||||| ||||| ||||| | ||||| ||||||||||||    
T  15702107 tggttgagttaccgcatgagtattggcgggaaagaactttgaaagaaattgaaagtgcggttggcactcc 15702176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 21152356 - 21152442
Alignment:
Q  78 atcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactcc 164  Q
    ||||||||||| ||   |||||||||||| ||| |||||||||||||| ||||| ||||| ||||| | ||||| ||||||||||||    
T  21152356 atcgctttggactcgtttggttgagttactgcatgagtattggcgggaaagaactttgaaagaaattgaaagtgaggttggcactcc 21152442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 15717417 - 15717482
Alignment:
Q  95 tggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggca 160  Q
    |||||||||||||||| |||||||| ||||| ||||| ||||| ||||| | ||||| ||||||||    
T  15717417 tggttgagttaccgcatgagtattgacgggaaagaactttgaaagaaattgaaagtgcggttggca 15717482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 11781125 - 11780869
Alignment:
Q  1 aatctcaagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttg 100  Q
    |||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||    
T  11781125 aatctcaagccgggtttgataagactatctcaatggaccaaagatttcaaatatcttgcttagaagcagactcatgtattgctttggattcgactggttg 11781026  T
Q  101 agttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttt 200  Q
    | |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||    
T  11781025 aattaccgcaagagtattggtgggagagaacattgaaggaaatagcaagtgtggttggcactccgatagacattgatggaccgacatgaaaccgcacttt 11780926  T
Q  201 tgtccactatgcacagatcctagttgacattgacctgtctaagagagcttatgatga 257  Q
    || |||||||||||  |||||||||||| ||||||| || ||||||||||| |||||    
T  11780925 tggccactatgcacgaatcctagttgaccttgacctatcaaagagagcttacgatga 11780869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 34 - 202
Target Start/End: Complemental strand, 13311231 - 13311063
Alignment:
Q  34 tggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacat 133  Q
    |||||||||| | |||||||||| ||||||||  | ||||||||||| ||||||||||   |||| ||||||||||| |||||||||||||||||||| |    
T  13311231 tggaccaaagctttcaaatatctagctcagaaacaaactcatgtatctctttggattcgcttggtggagttaccgcatgagtattggcgggagagaacct 13311132  T
Q  134 tgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttg 202  Q
    |||| ||||| ||||||| |||||| |||| ||| |||||  ||| ||||||| ||||||  |||||||    
T  13311131 tgaaggaaattgcaagtgcggttggtactctgattgacataaatggaccgacacgaaaccgtacttttg 13311063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 34 - 257
Target Start/End: Complemental strand, 10425539 - 10425316
Alignment:
Q  34 tggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacat 133  Q
    |||||||||||| |||||||||| ||||| ||  | |||||||||||  | |||||||   |||| |||||||||||  |||||| || ||||||||| |    
T  10425539 tggaccaaagatttcaaatatctggctcaaaaacatactcatgtatctttatggattcgcttggtggagttaccgcagaagtatttgcaggagagaacct 10425440  T
Q  134 tgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttgacattga 233  Q
    |||| ||||| ||||||| |||||| |||||||| ||||| |||| ||||||| ||||||  || ||||  |||||||||   ||  |||| ||||||||    
T  10425439 tgaaggaaattgcaagtgcggttggtactccgatcgacatagatggaccgacacgaaaccgtacctttggtcactatgcaagaattttagtcgacattga 10425340  T
Q  234 cctgtctaagagagcttatgatga 257  Q
     || ||||||||||||||||||||    
T  10425339 tctttctaagagagcttatgatga 10425316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 257
Target Start/End: Complemental strand, 1625751 - 1625549
Alignment:
Q  55 cttgctcagaagaagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtgg 154  Q
    |||||||||||  |||| ||||  || || ||||||| | | || ||||||||||| || ||||||| ||||||||  ||||| ||||||||||||||||    
T  1625751 cttgctcagaaacagacccatgcttcactctggattcgattcgtagagttaccgcaggaatattggcaggagagaattttgaaggaaatagcaagtgtgg 1625652  T
Q  155 ttggcactccgatagacattgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttgacattgacctgtctaagagagcttatga 254  Q
    | || || ||||| |||||||||| ||||||| ||||||  || |||| ||| || |||   ||  ||||| ||||||| || || ||||||||||||||    
T  1625651 tgggtaccccgattgacattgatggaccgacacgaaaccgtacctttggccattacgcaagaattttagttaacattgatctttcaaagagagcttatga 1625552  T
Q  255 tga 257  Q
    |||    
T  1625551 tga 1625549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 30730687 - 30730766
Alignment:
Q  70 actcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaag 149  Q
    |||||||| |||||||||||||   |||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  30730687 actcatgtttcgctttggattcgtttggtggagttaccgcaagagtattggcgggagagaaccttgaaggaaattgcaag 30730766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 202
Target Start/End: Original strand, 21805376 - 21805510
Alignment:
Q  68 agactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgat 167  Q
    |||| ||||||||| ||||||| |   |||| ||| |||| ||||||||||| ||||||||||| ||||| ||||| || |||| |||||| ||||| ||    
T  21805376 agacacatgtatcgatttggatacgtttggtggagctaccacaagagtattgacgggagagaacgttgaaggaaattgctagtgcggttgggactccaat 21805475  T
Q  168 agacattgatgcaccgacaagaaaccacacttttg 202  Q
     || ||||||| ||| || |||||||  |||||||    
T  21805476 tgatattgatggaccaactagaaaccgtacttttg 21805510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 4 - 257
Target Start/End: Complemental strand, 19829939 - 19829686
Alignment:
Q  4 ctcaagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagt 103  Q
    ||||||||| ||||||| ||| ||||  |||||||||||||| ||||||| ||| |||||||  || | |||||||| ||||||||||   |||||||||    
T  19829939 ctcaagccgagtttgatgagattctcgtagtggaccaaagatttcaaatacctttctcagaaacaggcacatgtatcactttggattcgcttggttgagt 19829840  T
Q  104 taccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttgt 203  Q
    ||||||| |||||||||||||||||||| ||||| || || |||||   ||||||||| ||||| |||||||||| ||||||| |||||||||||||||     
T  19829839 taccgcaggagtattggcgggagagaactttgaaggagatcgcaagcacggttggcaccccgattgacattgatggaccgacacgaaaccacacttttgg 19829740  T
Q  204 ccactatgcacagatcctagttgacattgacctgtctaagagagcttatgatga 257  Q
     |||||||||   ||  ||||||||||||| || || |||||||| ||||||||    
T  19829739 gcactatgcaagaattttagttgacattgatctttcaaagagagcatatgatga 19829686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 257
Target Start/End: Original strand, 16313235 - 16313488
Alignment:
Q  4 ctcaagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagt 103  Q
    |||||||||| |||| ||||  | || || |||| ||| ||| |||||||||| ||||||||  ||||||||||||  |||||||||    |||| ||||    
T  16313235 ctcaagccggatttgttaaggttatcacaatggatcaaggatttcaaatatctggctcagaaacagactcatgtatatctttggatttgcttggtggagt 16313334  T
Q  104 taccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttgt 203  Q
    ||||||| |||||||||||||||||||| ||||| ||||| ||||||| |||||| ||||||||  |||| ||||  |||||| ||||||  || ||||     
T  16313335 taccgcaggagtattggcgggagagaaccttgaaggaaattgcaagtgcggttggtactccgattaacatagatgggccgacacgaaaccgtacctttgg 16313434  T
Q  204 ccactatgcacagatcctagttgacattgacctgtctaagagagcttatgatga 257  Q
     ||||||| |   ||  |||| |||||||| || ||||||||||||||||||||    
T  16313435 tcactatgtaagaattttagtcgacattgatctttctaagagagcttatgatga 16313488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 257
Target Start/End: Original strand, 18494229 - 18494482
Alignment:
Q  4 ctcaagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagt 103  Q
    |||||||||| |||| ||||  | || || |||| ||| ||| |||||||||| ||||||||  ||||||||||||  |||||||||    |||| ||||    
T  18494229 ctcaagccggatttgttaaggttatcacaatggatcaaggatttcaaatatctggctcagaaacagactcatgtatatctttggatttgcttggtggagt 18494328  T
Q  104 taccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttgt 203  Q
    ||||||| |||||||||||||||||||| ||||| ||||| ||||||| |||||| ||||||||  |||| ||||  |||||| ||||||  || ||||     
T  18494329 taccgcaggagtattggcgggagagaaccttgaaggaaattgcaagtgcggttggtactccgattaacatagatgggccgacacgaaaccgtacctttgg 18494428  T
Q  204 ccactatgcacagatcctagttgacattgacctgtctaagagagcttatgatga 257  Q
     ||||||| |   ||  |||| |||||||| || ||||||||||||||||||||    
T  18494429 tcactatgtaagaattttagtcgacattgatctttctaagagagcttatgatga 18494482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 257
Target Start/End: Complemental strand, 14679906 - 14679722
Alignment:
Q  73 catgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagaca 172  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||||  | |||||||| ||||| |||| ||  |||||||| || ||||| |    
T  14679906 catgtatcgctttggattcgtttggttgagttaccgcaagagtattggcgggaacgtacattgaaggaaattgcaattgccgttggcacacctatagata 14679807  T
Q  173 ttgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttgacattgacctgtctaagagagcttatgatga 257  Q
    ||||||  || ||  | ||||  |||||||  |||||||| |  |||||||| || ||||| || || |||| ||||||||||||    
T  14679806 ttgatgggccaactcgcaaccgtacttttggtcactatgctcgcatcctagtggatattgatctttcaaagaaagcttatgatga 14679722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 191
Target Start/End: Complemental strand, 3582349 - 3582226
Alignment:
Q  68 agactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgat 167  Q
    ||||||||||||| |||||||| |   |||| ||  ||||||||||||||||||||||||| || ||||| ||||| | ||||| |||||| || || ||    
T  3582349 agactcatgtatcactttggatacgtttggtagaactaccgcaagagtattggcgggagaggaccttgaaggaaattgaaagtgcggttggaacacctat 3582250  T
Q  168 agacattgatgcaccgacaagaaa 191  Q
     || ||||||| ||| || |||||    
T  3582249 tgatattgatggaccaactagaaa 3582226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 20972021 - 20971973
Alignment:
Q  103 ttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtg 151  Q
    ||||||||||| |||||||||||||| || ||||| ||||| |||||||    
T  20972021 ttaccgcaagaatattggcgggagaggaccttgaaggaaattgcaagtg 20971973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 8e-46; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 4 - 257
Target Start/End: Complemental strand, 19070384 - 19070131
Alignment:
Q  4 ctcaagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagt 103  Q
    ||||||||||||||  ||||| | || ||||||||||||||| ||||||| ||| |||||||  |||| |||||||| ||||||||||   |||||||||    
T  19070384 ctcaagccgggtttattaagattatcgcagtggaccaaagatttcaaatacctttctcagaaacagacacatgtatctctttggattcgcttggttgagt 19070285  T
Q  104 taccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttgt 203  Q
    ||| |||||||||||||||||||||||| ||||| || || ||||| | ||||||||| ||||| |||||||||| || |||| |||||| ||||||||     
T  19070284 tactgcaagagtattggcgggagagaactttgaaggagatcgcaagcgcggttggcaccccgattgacattgatggactgacacgaaaccgcacttttgg 19070185  T
Q  204 ccactatgcacagatcctagttgacattgacctgtctaagagagcttatgatga 257  Q
     |||||||||   ||  |||||||||| || || || |||||||| ||||||||    
T  19070184 gcactatgcaataattttagttgacatcgatctttcaaagagagcatatgatga 19070131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 4 - 257
Target Start/End: Complemental strand, 5782902 - 5782649
Alignment:
Q  4 ctcaagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagt 103  Q
    ||||||||||||||| | ||| | || ||||||||||||||| ||||||| |||  ||||||  |||| |||||||| |||||||||    | |||||||    
T  5782902 ctcaagccgggtttgttgagattatcgcagtggaccaaagatttcaaatacctttatcagaaacagacacatgtatctctttggatttgcttagttgagt 5782803  T
Q  104 taccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttgt 203  Q
    ||||||| || ||||||||||||||||| ||||| || || ||||| | |||||||| ||| || |||||||||| ||||||| |||||||||||||||     
T  5782802 taccgcaggaatattggcgggagagaactttgaaggagatcgcaagcgcggttggcaatccaattgacattgatggaccgacacgaaaccacacttttgg 5782703  T
Q  204 ccactatgcacagatcctagttgacattgacctgtctaagagagcttatgatga 257  Q
     |||||||||   ||  ||||||||||||| || || |||||||| ||||||||    
T  5782702 gcactatgcaagaattttagttgacattgatctttcaaagagagcatatgatga 5782649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 11722491 - 11722635
Alignment:
Q  34 tggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacat 133  Q
    |||||||||||  |||||||||||||||| ||  |||||||||| || |||||||||| | |||| |||||||||||||| ||||||||||||||||  |    
T  11722491 tggaccaaagacttcaaatatcttgctcaaaaacagactcatgtttcactttggattcgattggtggagttaccgcaagaatattggcgggagagaattt 11722590  T
Q  134 tgaatgaaatagcaagtgtggttggcactccgatagacattgatg 178  Q
    |||| ||||||||||||| ||| || || || || ||||||||||    
T  11722591 tgaaggaaatagcaagtgcggtaggtacaccaattgacattgatg 11722635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 17763241 - 17763497
Alignment:
Q  1 aatctcaagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttg 100  Q
    ||||| || ||||||||| ||||  | |||||||||| ||| ||  ||||||| ||| |||| ||| |||| ||||| || ||||||||||   ||||||    
T  17763241 aatcttaacccgggtttgttaaggttatctcagtggaacaacgacttcaaatacctttctcaaaagcagacacatgtttcactttggattcgcttggttg 17763340  T
Q  101 agttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttt 200  Q
    |||||||||| ||||||| | |||||||||||||||| ||||| |||||  ||||||| || || || ||||||||||  | ||||   ||||| |||||    
T  17763341 agttaccgcaggagtattagtgggagagaacattgaaggaaattgcaagcatggttggaacccctatcgacattgatggtctgacacagaaccatacttt 17763440  T
Q  201 tgtccactatgcacagatcctagttgacattgacctgtctaagagagcttatgatga 257  Q
    ||  ||||||||||  ||  ||||||| |||||  | || |||||||| ||||||||    
T  17763441 tgggcactatgcacgcattttagttgatattgatttatcaaagagagcctatgatga 17763497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 178
Target Start/End: Complemental strand, 21899863 - 21899689
Alignment:
Q  4 ctcaagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagt 103  Q
    ||||||||||||||| || || ||||||||||||| |||||| |||||||||   | |||||| |||| |||||||| |||||||| |   |||| |||     
T  21899863 ctcaagccgggtttgctacgattctctcagtggactaaagatttcaaatatcagacgcagaagcagacacatgtatcactttggatacgtttggtcgagc 21899764  T
Q  104 taccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatg 178  Q
    |||| |||||||||||| |||||||||  ||||| ||||| || |||| |||||| ||||| || || |||||||    
T  21899763 taccacaagagtattggagggagagaatgttgaaggaaattgctagtgcggttgggactccaattgatattgatg 21899689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 35340140 - 35340196
Alignment:
Q  95 tggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtg 151  Q
    |||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||    
T  35340140 tggtggagttaccgcaagagtattggcgggagagaaccttgaaggaaattgcaagtg 35340196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 13644570 - 13644474
Alignment:
Q  68 agactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactcc 164  Q
    |||||||||  |||||||||||||   |||| ||| |||| ||||||||||||||||||||||| ||||  ||||| |||||||  ||||| |||||    
T  13644570 agactcatgcttcgctttggattcgtttggtagagctaccacaagagtattggcgggagagaaccttgatggaaattgcaagtgcagttggtactcc 13644474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 4 - 257
Target Start/End: Complemental strand, 33042338 - 33042085
Alignment:
Q  4 ctcaagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagt 103  Q
    ||||||||||||||| ||||| | || |||||||| |||||| |||||||||  ||||||||  |||| |||| ||| ||||||||||   |||| ||||    
T  33042338 ctcaagccgggtttgttaagattatcacagtggactaaagatttcaaatatcaggctcagaaacagacacatgcatctctttggattcgcttggtggagt 33042239  T
Q  104 taccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttgt 203  Q
    ||||||| |||||||||||||||||||| ||||| ||||| ||||||  |||||| |||||||| ||||| |||| ||||||| |||||   || ||||     
T  33042238 taccgcaggagtattggcgggagagaaccttgaaggaaatcgcaagtccggttggtactccgattgacatagatggaccgacacgaaactgtacctttgg 33042139  T
Q  204 ccactatgcacagatcctagttgacattgacctgtctaagagagcttatgatga 257  Q
     |||||||||   ||  |||| |||||||| || ||||||||||||||||||||    
T  33042138 tcactatgcaagaattttagtcgacattgatctttctaagagagcttatgatga 33042085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 178
Target Start/End: Complemental strand, 8668802 - 8668628
Alignment:
Q  4 ctcaagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagt 103  Q
    |||||||| |||||| ||||  | || || |||||||||||| ||||||||| |||||||||  | || |||||||| ||||||||||   |||| ||||    
T  8668802 ctcaagccaggtttgctaaggttatcacaatggaccaaagatttcaaatatcatgctcagaaacaaacacatgtatctctttggattcgcttggtggagt 8668703  T
Q  104 taccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatg 178  Q
    ||||||| |||||||||||||||||||| ||||| ||||| | ||||| |||||| |||||||| ||||| ||||    
T  8668702 taccgcaggagtattggcgggagagaactttgaaggaaatcgtaagtgcggttggtactccgattgacatagatg 8668628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 7 - 178
Target Start/End: Original strand, 10674740 - 10674911
Alignment:
Q  7 aagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagttac 106  Q
    ||||| |||||| ||||| | || || |||||||||||  |||||||||||||||| ||  | |||||||| || |||||||||| | | || |||||||    
T  10674740 aagccaggtttgttaagattttcacaatggaccaaagacttcaaatatcttgctcaaaaacaaactcatgtttcactttggattcgattagtggagttac 10674839  T
Q  107 cgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatg 178  Q
    ||||||| ||||||||||||||||  ||||| ||||||||||||| ||| || || ||||| ||||||||||    
T  10674840 cgcaagaatattggcgggagagaattttgaaggaaatagcaagtgcggtaggtacaccgattgacattgatg 10674911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 7 - 178
Target Start/End: Original strand, 10888380 - 10888551
Alignment:
Q  7 aagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagttac 106  Q
    ||||| |||||| ||||| | || || |||||||||||  |||||||||||||||| ||  | |||||||| || |||||||||| | | || |||||||    
T  10888380 aagccaggtttgttaagattttcacaatggaccaaagacttcaaatatcttgctcaaaaacaaactcatgtttcactttggattcgattagtggagttac 10888479  T
Q  107 cgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatg 178  Q
    ||||||| ||||||||||||||||  ||||| ||||||||||||| ||| || || ||||| ||||||||||    
T  10888480 cgcaagaatattggcgggagagaattttgaaggaaatagcaagtgcggtaggtacaccgattgacattgatg 10888551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 10697389 - 10697303
Alignment:
Q  34 tggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattgg 120  Q
    |||||||||||  |||||||||||||||| ||  | |||||||| || |||||||||| | ||||||||||||||||||| ||||||    
T  10697389 tggaccaaagacttcaaatatcttgctcaaaaacaaactcatgtttcactttggattcgattggttgagttaccgcaagaatattgg 10697303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 10911158 - 10911072
Alignment:
Q  34 tggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattgg 120  Q
    |||||||||||  |||||||||||||||| ||  | |||||||| || |||||||||| | ||||||||||||||||||| ||||||    
T  10911158 tggaccaaagacttcaaatatcttgctcaaaaacaaactcatgtttcactttggattcgattggttgagttaccgcaagaatattgg 10911072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 178
Target Start/End: Complemental strand, 1930388 - 1930216
Alignment:
Q  6 caagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagtta 105  Q
    ||||||||||||| || || |||| |||||||| |||||| |||| ||||   |  ||||  |||| ||||||||| ||||||| |   |||| ||| ||    
T  1930388 caagccgggtttgctacgattctcacagtggactaaagatttcaagtatcaaacgtagaaacagacacatgtatcgatttggatacgtttggtggagcta 1930289  T
Q  106 ccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatg 178  Q
    || ||||||||||||||||||||||| ||||| ||||| || || | |||||| ||||| || || |||||||    
T  1930288 ccacaagagtattggcgggagagaacgttgaaggaaattgctagcgcggttgggactccaattgatattgatg 1930216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 170
Target Start/End: Original strand, 17939282 - 17939384
Alignment:
Q  68 agactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgat 167  Q
    |||||||||  |||||||||||||   |||| ||| |||| |||||||||||||||||||||||  |||  ||||| |||||||  ||||| ||||| ||    
T  17939282 agactcatgcttcgctttggattcgtttggtggagctaccacaagagtattggcgggagagaaccctgatggaaattgcaagtgcagttggtactcctat 17939381  T
Q  168 aga 170  Q
    |||    
T  17939382 aga 17939384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 39915405 - 39915352
Alignment:
Q  104 taccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttg 157  Q
    ||||||||||||||||||||||||| || ||||| ||||| ||||||| |||||    
T  39915405 taccgcaagagtattggcgggagaggaccttgaaagaaattgcaagtgcggttg 39915352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 15443187 - 15443096
Alignment:
Q  79 tcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgataga 170  Q
    |||||||||||||   |||| ||| |||| |||||||||||||||||||||||  |||  ||||| |||||||  ||||| ||||| |||||    
T  15443187 tcgctttggattcttttggtggagctaccacaagagtattggcgggagagaaccctgatggaaattgcaagtgcagttggtactcctataga 15443096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 10693726 - 10693664
Alignment:
Q  116 attggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatg 178  Q
    |||||||||||||||  ||||| ||||||||||||| ||| || || ||||| ||||||||||    
T  10693726 attggcgggagagaattttgaaggaaatagcaagtgcggtaggtacaccgattgacattgatg 10693664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 10907492 - 10907430
Alignment:
Q  116 attggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatg 178  Q
    |||||||||||||||  ||||| ||||||||||||| ||| || || ||||| ||||||||||    
T  10907492 attggcgggagagaattttgaaggaaatagcaagtgcggtaggtacaccgattgacattgatg 10907430  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 158
Target Start/End: Original strand, 7188285 - 7188382
Alignment:
Q  61 cagaagaagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttgg 158  Q
    |||||| |||||| |||||| |||||||| |   |||| ||  ||| |||||| |||||||||||||| || ||||| ||||| ||||||| ||||||    
T  7188285 cagaagcagactcgtgtatcactttggatacgtttggtagaactactgcaagaatattggcgggagaggaccttgaaggaaattgcaagtgcggttgg 7188382  T

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Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 21591336 - 21591517
Alignment:
Q  4 ctcaagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagt 103  Q
    |||||||| |||||| ||||  | || || |||||||||||  |||||||||||||||||||  |||||||||| || |||||||||| | |||| ||||    
T  21591336 ctcaagccaggtttgttaaggttttcacaatggaccaaagacttcaaatatcttgctcagaaacagactcatgtttcactttggattcgattggtggagt 21591435  T
Q  104 taccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgac 185  Q
    |||||||||| |||||||||  |||||  ||||| ||||||||||||||||| || || ||||| |||||||||| ||||||    
T  21591436 taccgcaagaatattggcggttgagaattttgaaggaaatagcaagtgtggtaggtacaccgattgacattgatggaccgac 21591517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 14411513 - 14411694
Alignment:
Q  4 ctcaagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagt 103  Q
    |||||||| |||||| ||||  | || || |||||||||||  |||||||||||||||||||  |||||||||| || |||||||||| | |||| ||||    
T  14411513 ctcaagccaggtttgttaaggttttcacaatggaccaaagacttcaaatatcttgctcagaaacagactcatgtttcactttggattcgattggtggagt 14411612  T
Q  104 taccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgac 185  Q
    ||||||| || ||||||||||||||||  ||||| ||||||||||| | ||| || || ||||| |||||||||| ||||||    
T  14411613 taccgcaggaatattggcgggagagaattttgaaggaaatagcaagagcggtaggtacaccgattgacattgatggaccgac 14411694  T

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Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 17458628 - 17458850
Alignment:
Q  4 ctcaagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagt 103  Q
    ||||| ||||||||| ||||| | ||||  ||||||||| || ||||||||||| |||| ||  |||| |||    |||||||||||||  |||||||||    
T  17458628 ctcaatccgggtttgttaagattatctcgttggaccaaatatttcaaatatctttctcaaaaacagacacat----cgctttggattcacttggttgagt 17458723  T
Q  104 taccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttgt 203  Q
    ||||||| || ||||||| ||||||||| | ||| ||||| ||||| | ||||||||| ||||| |||||||||| | | |||||||||  ||||||||     
T  17458724 taccgcaggaatattggcaggagagaacttcgaaggaaatcgcaagcgcggttggcaccccgattgacattgatggatctacaagaaactgcacttttgg 17458823  T
Q  204 ccactatgcacagatcctagttgacat 230  Q
     |||||||||  |||  ||||||||||    
T  17458824 tcactatgcaatgattttagttgacat 17458850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 185
Target Start/End: Original strand, 23600121 - 23600272
Alignment:
Q  34 tggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacat 133  Q
    |||||||||||  |||||||||||||||||||  | | |||||| || ||||||||||   |||| ||||||||||| || |||||| |||| ||||  |    
T  23600121 tggaccaaagacttcaaatatcttgctcagaaacaaaatcatgtttcactttggattcgtttggtggagttaccgcaggaatattggtgggaaagaattt 23600220  T
Q  134 tgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgac 185  Q
    || | ||||||||||||| | | || || ||||| || ||||||| ||||||    
T  23600221 tgtaagaaatagcaagtgcgataggtacaccgattgaaattgatggaccgac 23600272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 18694085 - 18694150
Alignment:
Q  95 tggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggca 160  Q
    |||||||||||||||| |||||||||||||| ||||| ||||| ||||| | ||||| ||||||||    
T  18694085 tggttgagttaccgcatgagtattggcgggaaagaactttgaaagaaattgaaagtgcggttggca 18694150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 7198 - 7017
Alignment:
Q  4 ctcaagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagt 103  Q
    |||||||| |||||| ||||  | || || |||||||||||  |||||||||||||||||||  |||||||||| || |||||||||| | |||| ||||    
T  7198 ctcaagccaggtttgttaaggttttcacaatggaccaaagacttcaaatatcttgctcagaaacagactcatgtttcactttggattcgattggtggagt 7099  T
Q  104 taccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgac 185  Q
    ||||||| || ||||||||||||||||  ||||| ||||||||||| | ||| || || ||||| |||||||||| ||||||    
T  7098 taccgcaggaatattggcgggagagaattttgaaggaaatagcaagcgcggtaggtacaccgattgacattgatggaccgac 7017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 34 - 185
Target Start/End: Complemental strand, 3729424 - 3729273
Alignment:
Q  34 tggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacat 133  Q
    |||||||||||  |||||||||||||||||||  |||||||||| || |||||||||| | |||| |||||||||||||| ||||||||||||||||  |    
T  3729424 tggaccaaagacttcaaatatcttgctcagaaatagactcatgtttcactttggattcgattggtggagttaccgcaagaatattggcgggagagaattt 3729325  T
Q  134 tgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgac 185  Q
    |||| |||||| ||||||  || || || ||||| |||||||||| ||||||    
T  3729324 tgaaggaaataacaagtgcagtaggtacaccgattgacattgatggaccgac 3729273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 178
Target Start/End: Complemental strand, 20942510 - 20942402
Alignment:
Q  70 actcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatag 169  Q
    |||||||| |||||||||||||   |||| ||||||||||||||||||||||||||  | || ||||| |||||||| ||||  || ||||| || || |    
T  20942510 actcatgtttcgctttggattcgcttggtggagttaccgcaagagtattggcgggaacgtaccttgaaggaaatagctagtgccgtgggcacgcctattg 20942411  T
Q  170 acattgatg 178  Q
    |||||||||    
T  20942410 acattgatg 20942402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 11777194 - 11776975
Alignment:
Q  1 aatctcaagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttg 100  Q
    |||||||||||||||||| | ||| | || ||||||||||||||| ||||||| ||| |||| || | ||| ||||||||||||||||||    |  |||    
T  11777194 aatctcaagccgggtttgttgagattatcgcagtggaccaaagatttcaaatacctttctcataaca-gacacatgtatcgctttggattttttttattg 11777096  T
Q  101 agttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggca--------ctccgatagacattgatgcaccgacaagaaac 192  Q
    ||||||||||||||||||||||||||||||| ||||| || ||  |||||| ||||||||        | || || |||||||||| ||||||| |||||    
T  11777095 agttaccgcaagagtattggcgggagagaaccttgaaggagatcacaagtgcggttggcaccccaaatccccaattgacattgatggaccgacacgaaac 11776996  T
Q  193 cacacttttgtccactatgca 213  Q
    ||||||||||  |||||||||    
T  11776995 cacacttttgggcactatgca 11776975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 151
Target Start/End: Original strand, 13734685 - 13734789
Alignment:
Q  47 tcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagc 146  Q
    |||||||||||||||||||  |||||||||| || |||||||||| | |||| ||| |||| || || |||||||| |||||||  ||||| ||||||||    
T  13734685 tcaaatatcttgctcagaaacagactcatgtttcactttggattcgattggtggaggtaccacaggaatattggcgagagagaattttgaaggaaatagc 13734784  T
Q  147 aagtg 151  Q
    |||||    
T  13734785 aagtg 13734789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 18308445 - 18308363
Alignment:
Q  69 gactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtg 151  Q
    ||||||||| ||| ||||||| |   |||| ||||||||||||||||||||| |||||||||| ||||| ||||| |||||||    
T  18308445 gactcatgtctcgatttggatacgtttggtggagttaccgcaagagtattggtgggagagaaccttgaaggaaattgcaagtg 18308363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 33312633 - 33312689
Alignment:
Q  95 tggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtg 151  Q
    |||| |||||||| ||||||||||||||||||||||| ||||| ||||| |||||||    
T  33312633 tggtggagttaccacaagagtattggcgggagagaaccttgaaggaaattgcaagtg 33312689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 3548535 - 3548447
Alignment:
Q  70 actcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttgg 158  Q
    ||||||||||| |||||||| |   |||| ||  |||||||| |||||||||||||||| || ||||| ||||| ||||||| ||||||    
T  3548535 actcatgtatcactttggatacgtttggtagaactaccgcaaaagtattggcgggagaggaccttgaaggaaattgcaagtgcggttgg 3548447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 178
Target Start/End: Complemental strand, 61499 - 61325
Alignment:
Q  4 ctcaagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagt 103  Q
    ||||||||||||||| || || ||||||||||||| || ||| |||| ||||   | || ||| |||| ||||||||||||||||| |   |||| ||||    
T  61499 ctcaagccgggtttgctacgattctctcagtggactaaggatttcaagtatcagacacaaaagcagacacatgtatcgctttggatacgtttggtggagt 61400  T
Q  104 taccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatg 178  Q
    |||| ||||||||||||||||||||||| ||||| ||||| ||||||| |||||| ||||| || || |||||||    
T  61399 taccacaagagtattggcgggagagaacgttgaaagaaattgcaagtgcggttgggactccaattgatattgatg 61325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 4 - 178
Target Start/End: Original strand, 10299 - 10473
Alignment:
Q  4 ctcaagccgggtttgataagactctctcagtggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattcaactggttgagt 103  Q
    ||||||||||||||| || || ||||| ||||||| || ||| |||| ||||     || ||| |||| ||||||||||||||||| ||  |||| ||||    
T  10299 ctcaagccgggtttgctacgattctcttagtggactaaggatttcaagtatcagatacaaaagtagacacatgtatcgctttggatacatttggtggagt 10398  T
Q  104 taccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatg 178  Q
    |||| ||||||||||||||||||||||| ||||| ||||| ||||||| |||||| ||||| || || |||||||    
T  10399 taccacaagagtattggcgggagagaacgttgaaagaaattgcaagtgcggttgggactccaattgatattgatg 10473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 73 - 257
Target Start/End: Complemental strand, 31505 - 31321
Alignment:
Q  73 catgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagaca 172  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||||  | |||||||| ||||| |||||||  |||||||| || ||||| |    
T  31505 catgtatcgctttggattcgtttggttgagttaccgcaagagtattggcgggaatgtacattgaaggaaattgcaagtgccgttggcacacctatagata 31406  T
Q  173 ttgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttgacattgacctgtctaagagagcttatgatga 257  Q
    ||||||  || ||  ||||||  | |||||  |||||||| |  |||||||| || ||||| || || |||| ||||||||||||    
T  31405 ttgatgggccaactcgaaaccgtaattttggtcactatgctcgcatcctagtggatattgatctttcgaagaaagcttatgatga 31321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 73 - 257
Target Start/End: Complemental strand, 40816 - 40632
Alignment:
Q  73 catgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagaca 172  Q
    |||||||||||||||||||   ||||| |||||||||||||||||||||||||  | |||| ||| ||||| |||||||  |||||||| || ||||| |    
T  40816 catgtatcgctttggattcgtttggttcagttaccgcaagagtattggcgggaatgtacatagaaggaaattgcaagtgccgttggcacacctatagata 40717  T
Q  173 ttgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttgacattgacctgtctaagagagcttatgatga 257  Q
    ||||||  || ||  ||||||  |||||||  |||||||| |  |||||||| || ||||| || |  |||| ||||||||||||    
T  40716 ttgatgggccaactcgaaaccgtacttttggtcactatgctcgcatcctagtggatattgatcttttgaagaaagcttatgatga 40632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 38063 - 38143
Alignment:
Q  70 actcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagt 150  Q
    |||||||| |||||||||||||   |||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  38063 actcatgtttcgctttggattcgtttggtggagttaccgcaagagtattggcgggagcgaacattgaaggaaatagcaagt 38143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 160716 - 160636
Alignment:
Q  70 actcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagt 150  Q
    |||||||| |||||||||||||   |||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  160716 actcatgtttcgctttggattcgtttggtggagttaccgcaagagtattggcgggagcgaacattgaaggaaatagcaagt 160636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 178
Target Start/End: Original strand, 12071 - 12176
Alignment:
Q  73 catgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagaca 172  Q
    ||||||||| |||||||||   |||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||  || ||||| || ||||| |    
T  12071 catgtatcgttttggattcgtttggttgagttaccgcaagagtattggcgggagcgtacattgaaggaaattgcaagtgccgtaggcacgcctatagata 12170  T
Q  173 ttgatg 178  Q
    ||||||    
T  12171 ttgatg 12176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0292 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 19448 - 19529
Alignment:
Q  70 actcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtg 151  Q
    |||||||| |||||||||||||   |||| |||||||||||||| ||||||||||||||||| ||||| ||||| |||||||    
T  19448 actcatgtttcgctttggattcgcttggtggagttaccgcaagaatattggcgggagagaaccttgaaggaaattgcaagtg 19529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 51019 - 51088
Alignment:
Q  95 tggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactcc 164  Q
    |||||||||||||||| |||||||||||||| ||||| ||||| ||||| | ||||| ||||||||||||    
T  51019 tggttgagttaccgcatgagtattggcgggaaagaactttgaaagaaattgaaagtgcggttggcactcc 51088  T

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Target: scaffold0062; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 63558 - 63627
Alignment:
Q  95 tggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactcc 164  Q
    |||||||||||||||| |||||||||||||| ||||| ||||| ||||| | ||||| ||||||||||||    
T  63558 tggttgagttaccgcatgagtattggcgggaaagaactttgaaagaaattgaaagtgcggttggcactcc 63627  T

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Target: scaffold0062; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 65975 - 66040
Alignment:
Q  95 tggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggca 160  Q
    |||||||||||||||| |||||||| ||||| ||||| ||||| ||||| | ||||| ||||||||    
T  65975 tggttgagttaccgcatgagtattgacgggaaagaactttgaaagaaattgaaagtgcggttggca 66040  T

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Target: scaffold0238 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 1556 - 1469
Alignment:
Q  104 taccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaa 191  Q
    ||||||||||||||||||||||||| || ||||| ||||| ||||||| |||||| || ||||| || ||||||| ||| || |||||    
T  1556 taccgcaagagtattggcgggagaggaccttgaaggaaattgcaagtgcggttggaacaccgattgatattgatggaccaactagaaa 1469  T

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Target: scaffold0416 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 9234 - 9317
Alignment:
Q  68 agactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtg 151  Q
    ||||||| || ||||||||||| |   || |||| |||||||||||||||||||||||||| || ||||| || ||||||||||    
T  9234 agactcacgtttcgctttggatacggttgattgaattaccgcaagagtattggcgggagaggactttgaaggagatagcaagtg 9317  T

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Target: scaffold0063 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 59562 - 59619
Alignment:
Q  34 tggaccaaagatgtcaaatatcttgctcagaagaagactcatgtatcgctttggattc 91  Q
    |||||||||||  |||||||||||||||| ||  |||||||||| || ||||||||||    
T  59562 tggaccaaagacttcaaatatcttgctcataaacagactcatgtttcactttggattc 59619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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