View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0319_low_10 (Length: 341)

Name: NF0319_low_10
Description: NF0319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0319_low_10
NF0319_low_10
[»] chr6 (3 HSPs)
chr6 (97-267)||(8990834-8991004)
chr6 (97-267)||(9015281-9015451)
chr6 (29-102)||(8984539-8984612)
[»] chr5 (3 HSPs)
chr5 (263-316)||(25565594-25565647)
chr5 (217-273)||(15479515-15479571)
chr5 (239-267)||(1671610-1671638)
[»] chr7 (1 HSPs)
chr7 (217-267)||(22195104-22195154)
[»] chr3 (6 HSPs)
chr3 (217-267)||(16969541-16969591)
chr3 (216-273)||(45711408-45711465)
chr3 (216-267)||(50559186-50559237)
chr3 (217-267)||(26014858-26014908)
chr3 (233-267)||(46623969-46624003)
chr3 (214-267)||(19960607-19960660)
[»] chr8 (2 HSPs)
chr8 (217-273)||(36660419-36660475)
chr8 (217-267)||(24798332-24798382)
[»] chr4 (2 HSPs)
chr4 (217-267)||(2268482-2268532)
chr4 (217-267)||(24575826-24575876)
[»] chr2 (4 HSPs)
chr2 (217-267)||(2563751-2563800)
chr2 (217-267)||(9194287-9194337)
chr2 (217-267)||(22416259-22416309)
chr2 (217-267)||(31922267-31922317)
[»] chr1 (3 HSPs)
chr1 (217-267)||(12657268-12657318)
chr1 (217-267)||(33100854-33100904)
chr1 (217-267)||(50726223-50726273)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 97 - 267
Target Start/End: Original strand, 8990834 - 8991004
Alignment:
Q  97 agatggctaatgtgatttagacaggtagcactaattgagtgacgaacaacctatcatggtcgagtagagttggtgtccaaaggtgatatagaccgatata 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  8990834 agatggctaatgtgatttagacaggtagcactaattgagtgacgaacaacctatcatggccgagtagagttggtgtccaaaggtggtatagaccgatata 8990933  T
Q  197 cctgagaagattgagagagttttctctcacaaacttacattctctttttactttctctttctattgttttg 267  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8990934 cctgagaagattgagagagttttctctcacaaatttacattctctttttactttctctttctattgttttg 8991004  T

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Target: chr6; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 97 - 267
Target Start/End: Original strand, 9015281 - 9015451
Alignment:
Q  97 agatggctaatgtgatttagacaggtagcactaattgagtgacgaacaacctatcatggtcgagtagagttggtgtccaaaggtgatatagaccgatata 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  9015281 agatggctaatgtgatttagacaggtagcactaattgagtgacgaacaacctatcatggccgagtagagttggtgtccaaaggtggtatagaccgatata 9015380  T
Q  197 cctgagaagattgagagagttttctctcacaaacttacattctctttttactttctctttctattgttttg 267  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9015381 cctgagaagattgagagagttttctctcacaaatttacattctctttttactttctctttctattgttttg 9015451  T

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Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 8984539 - 8984612
Alignment:
Q  29 agagcataccatcgttacacaatggcccatgatttttgaaaaagctgcccattaattcaaaaattggaagatgg 102  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8984539 agagcataccatcgttacacaatgccccatgatttttgaaaaagctgcccattaattcaaaaattggaagatgg 8984612  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 25565594 - 25565647
Alignment:
Q  263 ttttgcttattcgatgaatattatcattttggaatctattgccaaatttaaatt 316  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  25565594 ttttgcttattcaatgaatattatcattttggaatttattgccaaatttaaatt 25565647  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 15479515 - 15479571
Alignment:
Q  217 tttctctcacaaacttacattctctttttactttctctttctattgttttgcttatt 273  Q
    |||||||| || ||||| ||| |||||||||||||||| |||||||||||| |||||    
T  15479515 tttctctctcatacttatattatctttttactttctctctctattgttttggttatt 15479571  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 1671610 - 1671638
Alignment:
Q  239 tctttttactttctctttctattgttttg 267  Q
    |||||||||||||||||||||||||||||    
T  1671610 tctttttactttctctttctattgttttg 1671638  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 22195154 - 22195104
Alignment:
Q  217 tttctctcacaaacttacattctctttttactttctctttctattgttttg 267  Q
    |||||||| ||||||  ||||||||||||||||||||||| ||||||||||    
T  22195154 tttctctctcaaactcgcattctctttttactttctctttatattgttttg 22195104  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 16969591 - 16969541
Alignment:
Q  217 tttctctcacaaacttacattctctttttactttctctttctattgttttg 267  Q
    |||||||| || ||| ||||| |||||||||||||||||||||||||||||    
T  16969591 tttctctctcatactcacattatctttttactttctctttctattgttttg 16969541  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 45711465 - 45711408
Alignment:
Q  216 ttttctctcacaaacttacattctctttttactttctctttctattgttttgcttatt 273  Q
    ||||||||| || ||| ||||| |||||||||||||||| |||||||||||| |||||    
T  45711465 ttttctctctcatactcacattatctttttactttctctctctattgttttggttatt 45711408  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 50559237 - 50559186
Alignment:
Q  216 ttttctctcacaaacttacattctctttttactttctctttctattgttttg 267  Q
    ||||||||| || ||||||||| | |||||||||||||| ||||||||||||    
T  50559237 ttttctctctcatacttacattatgtttttactttctctctctattgttttg 50559186  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 26014858 - 26014908
Alignment:
Q  217 tttctctcacaaacttacattctctttttactttctctttctattgttttg 267  Q
    |||||||| || ||| ||||| |||||||||||||||| ||||||||||||    
T  26014858 tttctctctcatactcacattatctttttactttctctctctattgttttg 26014908  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 267
Target Start/End: Original strand, 46623969 - 46624003
Alignment:
Q  233 acattctctttttactttctctttctattgttttg 267  Q
    ||||| |||||||||||||||||||||||||||||    
T  46623969 acattatctttttactttctctttctattgttttg 46624003  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 19960660 - 19960607
Alignment:
Q  214 agttttctctcacaaacttacattctctttttactttctctttctattgttttg 267  Q
    ||||||||||| || ||||||||| | |||||||||| ||| ||||||||||||    
T  19960660 agttttctctctcatacttacattatgtttttactttttctctctattgttttg 19960607  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 36660475 - 36660419
Alignment:
Q  217 tttctctcacaaacttacattctctttttactttctctttctattgttttgcttatt 273  Q
    |||||||| || ||||||||| |||||||||||||||| ||||||| |||| |||||    
T  36660475 tttctctctcatacttacattatctttttactttctctctctattgctttggttatt 36660419  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 24798382 - 24798332
Alignment:
Q  217 tttctctcacaaacttacattctctttttactttctctttctattgttttg 267  Q
    |||||||| || ||| ||||| | |||||||||||||||||||||||||||    
T  24798382 tttctctctcatactcacattatatttttactttctctttctattgttttg 24798332  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 2268532 - 2268482
Alignment:
Q  217 tttctctcacaaacttacattctctttttactttctctttctattgttttg 267  Q
    |||||||| || ||| ||||| |||||||||||| ||||||||||||||||    
T  2268532 tttctctctcatactcacattatctttttactttttctttctattgttttg 2268482  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 24575876 - 24575826
Alignment:
Q  217 tttctctcacaaacttacattctctttttactttctctttctattgttttg 267  Q
    |||||||| || ||||||||| |||||||||||||||| ||||||| ||||    
T  24575876 tttctctctcatacttacattgtctttttactttctctctctattgctttg 24575826  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 2563751 - 2563800
Alignment:
Q  217 tttctctcacaaacttacattctctttttactttctctttctattgttttg 267  Q
    |||||||| || ||||||||| |||||||||||| ||||||||||||||||    
T  2563751 tttctctctcatacttacatt-tctttttactttatctttctattgttttg 2563800  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 9194287 - 9194337
Alignment:
Q  217 tttctctcacaaacttacattctctttttactttctctttctattgttttg 267  Q
    |||||||| || ||| ||||| |||||||||||||||| ||||||||||||    
T  9194287 tttctctctcatactcacattatctttttactttctctctctattgttttg 9194337  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 22416259 - 22416309
Alignment:
Q  217 tttctctcacaaacttacattctctttttactttctctttctattgttttg 267  Q
    |||||||| || ||||||||| |||||||||||||||| ||||||| ||||    
T  22416259 tttctctcccatacttacattatctttttactttctctctctattgctttg 22416309  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 31922317 - 31922267
Alignment:
Q  217 tttctctcacaaacttacattctctttttactttctctttctattgttttg 267  Q
    |||||||| |||||| ||||| |||||||||||| ||||||||| ||||||    
T  31922317 tttctctctcaaactcacattttctttttactttatctttctatcgttttg 31922267  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 12657268 - 12657318
Alignment:
Q  217 tttctctcacaaacttacattctctttttactttctctttctattgttttg 267  Q
    |||||||| || ||| ||||| |||||||||||||||||||||||| ||||    
T  12657268 tttctctctcatactcacattatctttttactttctctttctattgctttg 12657318  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 33100854 - 33100904
Alignment:
Q  217 tttctctcacaaacttacattctctttttactttctctttctattgttttg 267  Q
    |||||||| || ||| ||||| |||||||||||||||| ||||||||||||    
T  33100854 tttctctctcatactcacattatctttttactttctctctctattgttttg 33100904  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 50726273 - 50726223
Alignment:
Q  217 tttctctcacaaacttacattctctttttactttctctttctattgttttg 267  Q
    |||||||| || | ||||||| |||||||||||||||| ||||||||||||    
T  50726273 tttctctctcacatttacattatctttttactttctctctctattgttttg 50726223  T

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