View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0319_low_16 (Length: 260)
Name: NF0319_low_16
Description: NF0319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0319_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 4121172 - 4121367
Alignment:
| Q |
16 |
gagcagagacgcgaaggtttgaaattgtgggggcagtcacaagactgccaactagcaataacacctgatctttgatattgaggaaaattgtggaaaaatg |
115 |
Q |
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| T |
4121172 |
gagcagagacgtgaaggtttgaaattgtgggggcagtcacaagactgccaactagcaataacacctgatctttgatattgaggaaaattgtggaaaaatg |
4121271 |
T |
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| Q |
116 |
tagttgatgccacacaattgcaattgttgtgatgtggtggtcccaaactctgacattgtggctacaatcgcagtcacggagtacaattcaaaaatt |
211 |
Q |
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| T |
4121272 |
tagttgatgccacacaattgcaattgttgtgatgtggtggtcccaaactctgacattgtggctacaatcgcagtcacggagtacaattcaaaaatt |
4121367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 4364075 - 4364004
Alignment:
| Q |
82 |
gatctttgatattgaggaaaattgtggaaaaatgtagttgatgccacacaattgcaattgttgtgatgtggt |
153 |
Q |
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| T |
4364075 |
gatctttgatgttaaggaaaactgaagaaaaatgaggttgatgcgacacaattgtgattgttgtgatgtggt |
4364004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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