View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0319_low_19 (Length: 247)
Name: NF0319_low_19
Description: NF0319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0319_low_19 |
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| [»] scaffold2079 (1 HSPs) |
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| [»] scaffold1112 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 76 - 215
Target Start/End: Complemental strand, 6242388 - 6242251
Alignment:
| Q |
76 |
agacagtgacccat-aaaaacgtttaatacgaattcgttttatactatagttctcgattgagaaacttcacgaccaaagagtaaacaagattgaaccggt |
174 |
Q |
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| T |
6242388 |
agacagtgacccattaaaaacgtttaatacgaattcgttttatactatagttctcgatt--gaaatttcttgtccaacgagcaaagaaaattgaacctgt |
6242291 |
T |
|
| Q |
175 |
cccaccaaatagatttccatttattccttcatttttatatt |
215 |
Q |
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| T |
6242290 |
cccaccaaataga-ttccatttattccttcatttttatatt |
6242251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 6333888 - 6333977
Alignment:
| Q |
36 |
aagaaaaaacatggaaaaagaggtttgacacaatttgga-aagacagtgacccataaaaacgtttaatacgaattcgttttatactatagt |
125 |
Q |
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| T |
6333888 |
aagaaaaaacagggaaaaagaggtatgacacaatttggatgagaaagtgacccatttaaacgtttaatacgaa-tcgttttatacgatagt |
6333977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 6326397 - 6326500
Alignment:
| Q |
36 |
aagaaaaaacatggaaaaagaggtttgacacaatttggaaa------gacagtgacccataaaaacgtttaatacgaattcgttttatactatagttctc |
129 |
Q |
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| T |
6326397 |
aagaaaagacatggaaaaagaggcttgacacactttggaaagatagtgaaagtgacccat-taaacgtttaatacgaa-tcgttttatacgatagtattc |
6326494 |
T |
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| Q |
130 |
gattga |
135 |
Q |
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|||||| |
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| T |
6326495 |
gattga |
6326500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 6330641 - 6330679
Alignment:
| Q |
80 |
agtgacccataaaaacgtttaatacgaattcgttttatac |
119 |
Q |
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| T |
6330641 |
agtgacccataaaa-cgtttaatacgaattcgttttatac |
6330679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 6347119 - 6347157
Alignment:
| Q |
80 |
agtgacccataaaaacgtttaatacgaattcgttttatac |
119 |
Q |
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| T |
6347119 |
agtgacccataaaa-cgtttaatacgaattcgttttatac |
6347157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 36 - 215
Target Start/End: Complemental strand, 612 - 438
Alignment:
| Q |
36 |
aagaaaaaacatggaaaaagaggtttgacacaatttggaa-agacagtgacccataaaaacgtttaatacgaattcgttttatactatagttctcgattg |
134 |
Q |
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|||||||||||||||||| ||| | ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
612 |
aagaaaaaacatggaaaaggagctatgaaacaatttgcatgagacagtgacccataaaaacgtttaatacgaattcgttttatactata---ctcgatt- |
517 |
T |
|
| Q |
135 |
agaaacttcacgaccaaagagtaaacaagattgaaccggtcccaccaaatagatttccatttattccttcatttttatatt |
215 |
Q |
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||| ||| | |||| ||| ||| | |||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
516 |
-gaactttcttgtccaacgagcaaaaacaattgaacctgtcccaccaaataga-ttccatttattccttcatttttatatt |
438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 161 - 121
Alignment:
| Q |
80 |
agtgacccataaaaacgtttaatacgaattcgttttatacta |
121 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| |
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| T |
161 |
agtgacccataaaa-cgtttaatacgaattcgttttatacta |
121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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