View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0319_low_7 (Length: 349)

Name: NF0319_low_7
Description: NF0319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0319_low_7
NF0319_low_7
[»] chr2 (2 HSPs)
chr2 (1-252)||(12100841-12101092)
chr2 (12-234)||(5114702-5114924)
[»] chr1 (2 HSPs)
chr1 (1-253)||(11781101-11781354)
chr1 (36-234)||(10425558-10425756)
[»] scaffold0021 (1 HSPs)
scaffold0021 (15-234)||(148291-148510)
[»] chr4 (8 HSPs)
chr4 (2-232)||(33042318-33042547)
chr4 (3-226)||(8668783-8669006)
chr4 (60-199)||(10674561-10674699)
chr4 (60-199)||(10888201-10888339)
chr4 (60-199)||(10911226-10911364)
chr4 (8-134)||(15443248-15443374)
chr4 (60-199)||(10697457-10697595)
chr4 (56-134)||(17939106-17939184)
[»] chr5 (5 HSPs)
chr5 (9-232)||(19070371-19070594)
chr5 (8-232)||(5782888-5783112)
chr5 (62-199)||(11722284-11722421)
chr5 (56-134)||(13644668-13644746)
chr5 (3-116)||(17763150-17763263)
[»] chr8 (3 HSPs)
chr8 (2-234)||(17458416-17458648)
chr8 (3-199)||(21591159-21591355)
chr8 (63-199)||(14411336-14411472)
[»] chr6 (3 HSPs)
chr6 (8-231)||(11777177-11777400)
chr6 (8-134)||(33312430-33312556)
chr6 (60-178)||(13734486-13734604)
[»] chr7 (2 HSPs)
chr7 (60-199)||(3729492-3729631)
chr7 (105-199)||(17181404-17181498)
[»] scaffold0063 (1 HSPs)
scaffold0063 (8-178)||(59376-59546)
[»] scaffold0363 (1 HSPs)
scaffold0363 (63-199)||(7239-7375)
[»] chr3 (1 HSPs)
chr3 (6-172)||(19829923-19830089)


Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 12101092 - 12100841
Alignment:
Q  1 gtcttatcaaacccggcttgagattgattgtaccagctgcccatatttgacgtagatcctccgccgaatcaaaatgaaaatcatagtatcctttgcctaa 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12101092 gtcttatcaaacccgacttgagattgattgtaccagctgcccataattgacgtagatcctccaccgaatcaaaatgaaaatcatagtatcctttgcctaa 12100993  T
Q  101 aggaaccattttccatgctgccattgttttccaacgctttcccaatttggtgcttaggtcacgtgcagaatatggtttctcacccttgtttagagtcaat 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12100992 aggaaccattttccatgctgccattgttttccaaagctttcccaatttggtgcttaggtcacgtgcagaatatggtttctcacccttgtttagagtcaat 12100893  T
Q  201 ctagcccgtaacgtattcttgaattcctctacactacgtttatactcctcct 252  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  12100892 ctagcccgtaacgtattcttgaattcctctacaccacggttatactcctcct 12100841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 5114924 - 5114702
Alignment:
Q  12 cccggcttgagattgattgtaccagctgcccatatttgacgtagatcctccgccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaaccattt 111  Q
    ||||||||||| || ||||| || ||||||||||| |  | |||||| || ||||| ||||||||||| |||||||| |||||||| | ||| |||||||    
T  5114924 cccggcttgaggttaattgtgcctgctgcccatatcttccttagatcgtcagccgagtcaaaatgaaagtcatagtaacctttgccgagaggcaccattt 5114825  T
Q  112 tccatgctgccattgttttccaacgctttcccaatttggtgcttaggtcacgtgcagaatatggtttctcacccttgtttagagtcaatctagcccgtaa 211  Q
    ||||  | |||| |||||||||| ||||||| | |||   ||||| | |||||||||| ||||| || || |||||||| |||| ||| | | ||| |||    
T  5114824 tccaaccagccaatgttttccaaagctttccgattttatcgcttaaggcacgtgcagagtatggcttatctcccttgttaagagacaaacgaacccttaa 5114725  T
Q  212 cgtattcttgaattcctctacac 234  Q
    || ||||||| |||| |||||||    
T  5114724 cgcattcttgcattcatctacac 5114702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 11781101 - 11781354
Alignment:
Q  1 gtcttatcaaacccggcttgagattgattgtaccagctgcccatatttgacgtagatcctccgccgaat-caaaatgaaaatcatagtatcctttgccta 99  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||| |||||||| |||||||||||||    
T  11781101 gtcttatcaaacccggcttgagattgattgtacaagctgcccatattttacgtagatcctctgccgaattcaaaatggaaatcataatatcctttgccta 11781200  T
Q  100 aaggaaccattttccatgctgccattgttttccaacgctttcccaatttggtgcttaggtcacgtgcagaatatggtttctcacccttgtttagagtcaa 199  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||| |||    
T  11781201 aaggaaccattttccatgccgccattgttttccaaagctttcccaatttggtgcttaggtcacatgcagagtacggtttctcacccttgtttagagccaa 11781300  T
Q  200 tctagcccgtaacgtattcttgaattcctctacactacgtttatactcctcctg 253  Q
    | |||||||||| | | ||||| |||| ||||||| ||| | ||||||||||||    
T  11781301 tttagcccgtaatgcactcttgcattcatctacaccacggtgatactcctcctg 11781354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 234
Target Start/End: Original strand, 10425558 - 10425756
Alignment:
Q  36 gctgcccatatttgacgtagatcctccgccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaaccattttccatgctgccattgttttccaac 135  Q
    ||||||||||| |  | |||||| || | ||| ||||||||||| |||||||| | |||| | | ||| |||||||||||  | |||  ||||||||||     
T  10425558 gctgcccatatcttccttagatcatcggtcgagtcaaaatgaaagtcatagtaacatttgtcgagaggcaccattttccaaccagccgatgttttccaaa 10425657  T
Q  136 gctttcccaatttggtgcttaggtcacgtgcagaatatggtttctcacccttgtttagagtcaatctagcccgtaacgtattcttgaattcctctacac 234  Q
    | ||| | | |||  |||||| ||||||||| || |||||||| || |||| ||| |||||||| | ||||| ||||| ||||||| |||| |||||||    
T  10425658 gtttttcgattttattgcttaagtcacgtgcggagtatggtttatctccctagttaagagtcaaacgagcccttaacgcattcttgcattcatctacac 10425756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 148291 - 148510
Alignment:
Q  15 ggcttgagattgattgtaccagctgcccatatttgacgtagatcctccgccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaaccattttcc 114  Q
    ||||| ||||| || || || |||||||||||||  ||||  ||||||||||| ||| |||||||||| |||||||||||||||| ||| ||||||| ||    
T  148291 ggcttaagattaatggtgcctgctgcccatattttgcgtaagtcctccgccgattcataatgaaaatcttagtatcctttgcctagaggcaccatttacc 148390  T
Q  115 atgctgccattgttttccaacgctttcccaatttggtgcttaggtcacgtgcagaatatggtttctcacccttgtttagagtcaatctagcccgtaacgt 214  Q
    |  ||||| | |||||||||  |  |||  ||||||| || | ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||     
T  148391 aaactgccgtagttttccaaatccctcctgatttggtactcaagtcacgtgccgaataaggtttatcacccttgtttagagtcaatctagcccgtaacgc 148490  T
Q  215 attcttgaattcctctacac 234  Q
    ||||||| ||||||||||||    
T  148491 attcttgcattcctctacac 148510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 2 - 232
Target Start/End: Original strand, 33042318 - 33042547
Alignment:
Q  2 tcttatcaaacccggcttgagattgattgtaccagctgcccatatttgacgtagatcctccgccgaatcaaaatgaaaatcatagtatcctttgcctaaa 101  Q
    ||||| ||||||||||||||| |||| ||| |  |||||||||||||  | |||||| |||||||| ||||| ||||| |||||||| |||||||| | |    
T  33042318 tcttaacaaacccggcttgaggttgactgtgcatgctgcccatattttccttagatcatccgccgagtcaaagtgaaagtcatagtaacctttgccgaga 33042417  T
Q  102 ggaaccattttccatgctgccattgttttccaacgctttcccaatttggtgcttaggtcacgtgcagaatatggtttctcacccttgtttagagtcaatc 201  Q
    || ||||||||||||   |||  |||||||||| ||||||| | ||||||  ||||||||||||||||||| || || || |||||||| ||||||||||    
T  33042418 ggcaccattttccatctcgccgatgttttccaaagctttccgattttggtatttaggtcacgtgcagaatacggcttatc-cccttgttaagagtcaatc 33042516  T
Q  202 tagcccgtaacgtattcttgaattcctctac 232  Q
     ||||| ||||| ||||||| ||||||||||    
T  33042517 gagcccttaacgcattcttgcattcctctac 33042547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 8668783 - 8669006
Alignment:
Q  3 cttatcaaacccggcttgagattgattgtaccagctgcccatatttgacgtagatcctccgccgaatcaaaatgaaaatcatagtatcctttgcctaaag 102  Q
    |||| |||||| |||||||| || | |||  | ||||||||||| |  | |||||| |||||||| ||||||||||||||||||||||||||||| | ||    
T  8668783 cttagcaaacctggcttgaggttaactgtgtctgctgcccatatcttccctagatcgtccgccgagtcaaaatgaaaatcatagtatcctttgccgagag 8668882  T
Q  103 gaaccattttccatgctgccattgttttccaacgctttcccaatttggtgcttaggtcacgtgcagaatatggtttctcacccttgtttagagtcaatct 202  Q
    | |||||||||||  | |||  |||||||||| ||||| | | |||  |||||| |||||||||||| ||||| || || |||||||| |||||||| |     
T  8668883 gcaccattttccagcccgccgatgttttccaaagcttttcgattttattgcttaagtcacgtgcagagtatggcttatctcccttgttaagagtcaaacg 8668982  T
Q  203 agcccgtaacgtattcttgaattc 226  Q
    ||||| |||||  |||||| ||||    
T  8668983 agcccttaacgccttcttgcattc 8669006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 199
Target Start/End: Complemental strand, 10674699 - 10674561
Alignment:
Q  60 tccgccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaaccattttccatgctgccattgttttccaacgctttcccaatttggtgcttaggt 159  Q
    |||||||| ||||| ||||| ||||| || |||||||||| ||| |||||||||||  |||||  |||||||||  ||||||| | |||| ||||||| |    
T  10674699 tccgccgattcaaagtgaaagtcataatagcctttgcctagaggcaccattttccaccctgcc-gtgttttccattgctttccaattttgttgcttagat 10674601  T
Q  160 cacgtgcagaatatggtttctcacccttgtttagagtcaa 199  Q
    |||||||| | |||||||| || |||||||| ||||||||    
T  10674600 cacgtgcaaagtatggtttatctcccttgttaagagtcaa 10674561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 199
Target Start/End: Complemental strand, 10888339 - 10888201
Alignment:
Q  60 tccgccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaaccattttccatgctgccattgttttccaacgctttcccaatttggtgcttaggt 159  Q
    |||||||| ||||| ||||| ||||| || |||||||||| ||| |||||||||||  |||||  |||||||||  ||||||| | |||| ||||||| |    
T  10888339 tccgccgattcaaagtgaaagtcataatagcctttgcctagaggcaccattttccaccctgcc-gtgttttccattgctttccaattttgttgcttagat 10888241  T
Q  160 cacgtgcagaatatggtttctcacccttgtttagagtcaa 199  Q
    |||||||| | |||||||| || |||||||| ||||||||    
T  10888240 cacgtgcaaagtatggtttatctcccttgttaagagtcaa 10888201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 199
Target Start/End: Original strand, 10911226 - 10911364
Alignment:
Q  60 tccgccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaaccattttccatgctgccattgttttccaacgctttcccaatttggtgcttaggt 159  Q
    |||||||| ||||| ||||| ||||| || |||||||||| ||| |||||||||||  |||||  |||||||||  ||||||| | |||| ||||||| |    
T  10911226 tccgccgattcaaagtgaaagtcataatagcctttgcctagaggcaccattttccaccctgcc-gtgttttccattgctttccaattttgttgcttagat 10911324  T
Q  160 cacgtgcagaatatggtttctcacccttgtttagagtcaa 199  Q
    |||||||| | |||||||| || |||||||| ||||||||    
T  10911325 cacgtgcaaagtatggtttatctcccttgttaagagtcaa 10911364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 15443248 - 15443374
Alignment:
Q  8 caaacccggcttgagattgattgtaccagctgcccatatttgacgtagatcctccgccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaacc 107  Q
    |||||| |||||||||||||  || || ||| |||||||||    || |||||||||||| ||||||||||| ||||| || || ||||| | ||| |||    
T  15443248 caaaccaggcttgagattgaccgtgcctgctacccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataccccttgccaagaggcacc 15443347  T
Q  108 attttccatgctgccattgttttccaa 134  Q
    ||||||||| |||||||||| ||||||    
T  15443348 attttccatcctgccattgtcttccaa 15443374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 199
Target Start/End: Original strand, 10697457 - 10697595
Alignment:
Q  60 tccgccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaaccattttccatgctgccattgttttccaacgctttcccaatttggtgcttaggt 159  Q
    |||||||| ||||| ||||| ||||| || |||||||||| ||| |||||||||||  |||||  |||||||||  ||||||| | ||   ||||||| |    
T  10697457 tccgccgattcaaagtgaaagtcataatagcctttgcctagaggcaccattttccaccctgcc-gtgttttccatagctttccaatttatttgcttagat 10697555  T
Q  160 cacgtgcagaatatggtttctcacccttgtttagagtcaa 199  Q
    || ||||| | |||||||| || |||||||| ||||||||    
T  10697556 catgtgcaaagtatggtttatctcccttgttaagagtcaa 10697595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 17939184 - 17939106
Alignment:
Q  56 atcctccgccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaaccattttccatgctgccattgttttccaa 134  Q
    |||||||||||| ||||||||||| ||||| || || ||||| | ||  |||||||||||| |||||||||| ||||||    
T  17939184 atcctccgccgagtcaaaatgaaagtcataataccccttgccaagagacaccattttccatcctgccattgtcttccaa 17939106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 19070371 - 19070594
Alignment:
Q  9 aaacccggcttgagattgattgtaccagctgcccatatttgacgtagatcctccgccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaacca 108  Q
    |||||||||||||| |||| |||||| |||||||||||||  |||||||| |||||||| ||||| ||||| |||||||| |||||||| | |||  |||    
T  19070371 aaacccggcttgaggttgactgtacctgctgcccatattttccgtagatcatccgccgagtcaaagtgaaagtcatagtaacctttgccaagaggcgcca 19070470  T
Q  109 ttttccatgctgccattgttttccaacgctttcccaatttggtgcttaggtcacgtgcagaatatggtttctcacccttgtttagagtcaatctagcccg 208  Q
    ||||||| || |||  |||||||||| ||||||| | |||||| ||||  |||||||||||||| || || || |||||||| |||||||| | | |||     
T  19070471 ttttccaggccgccgatgttttccaatgctttcctattttggtacttaaatcacgtgcagaatacggcttatcccccttgttaagagtcaagcgacccct 19070570  T
Q  209 taacgtattcttgaattcctctac 232  Q
    ||||| ||||||| |||| |||||    
T  19070571 taacgcattcttgcattcttctac 19070594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 5782888 - 5783112
Alignment:
Q  8 caaacccggcttgagattgattgtaccagctgcccatatttgacgtagatcctccgccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaacc 107  Q
    ||||||||||||||| |||| |||||| |||||||||||||  |||||||| ||| |||| ||||| ||||| |||||||| |||||||| | ||| |||    
T  5782888 caaacccggcttgaggttgactgtacctgctgcccatattttccgtagatcatccaccgagtcaaagtgaaagtcatagtaacctttgccaagaggcacc 5782987  T
Q  108 attttccatgctgccattgttttccaacgctttcccaatttggtgcttaggtcacgtgcagaatatggtttctcacccttgtttagagtcaatctagccc 207  Q
    |||||||| || |||  |||||||||| ||||||| | |||||| ||||  ||||||||| |||| || || || |||||||| |||||||| | |||||    
T  5782988 attttccaggccgccgatgttttccaatgctttcctattttggtacttaaatcacgtgcaaaatacggcttatctcccttgttaagagtcaagcgagccc 5783087  T
Q  208 gtaacgtattcttgaattcctctac 232  Q
     ||||  ||||||| |||| |||||    
T  5783088 ttaacacattcttgcattcttctac 5783112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 11722421 - 11722284
Alignment:
Q  62 cgccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaaccattttccatgctgccattgttttccaacgctttcccaatttggtgcttaggtca 161  Q
    |||||| ||||| ||||||||||| || |||||||||| ||| |||||||||||  |||||| |||||| ||  ||||||| | |||| ||||||| |||    
T  11722421 cgccgagtcaaagtgaaaatcataatagcctttgcctagaggcaccattttccaccctgccaatgtttttcatagctttccaattttgttgcttagatca 11722322  T
Q  162 cgtgcagaatatggtttctcacccttgtttagagtcaa 199  Q
    |||||| | |||||||| || |||||||| ||||||||    
T  11722321 cgtgcaaagtatggtttatctcccttgttaagagtcaa 11722284  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 13644668 - 13644746
Alignment:
Q  56 atcctccgccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaaccattttccatgctgccattgttttccaa 134  Q
    |||||||||||| ||||||||||| ||||| || || ||||| | ||| |||||||||||| |||||||||| ||||||    
T  13644668 atcctccgccgagtcaaaatgaaagtcataataccccttgccaagaggcaccattttccattctgccattgtcttccaa 13644746  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 17763263 - 17763150
Alignment:
Q  3 cttatcaaacccggcttgagattgattgtaccagctgcccatatttgacgtagatcctccgccgaatcaaaatgaaaatcatagtatcctttgcctaaag 102  Q
    |||| ||||||||| || ||||| || || |  ||| ||||||||| |||||  || ||||||||||||||  || ||||||||||||||||| | | ||    
T  17763263 cttaacaaacccgggttaagatttatggtgcatgcttcccatattttacgtaattcatccgccgaatcaaagggagaatcatagtatcctttgtcgagag 17763164  T
Q  103 gaaccattttccat 116  Q
    | ||||||||||||    
T  17763163 gtaccattttccat 17763150  T

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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 2 - 234
Target Start/End: Complemental strand, 17458648 - 17458416
Alignment:
Q  2 tcttatcaaacccggcttgagattgattgtaccagctgcccatatttgacgtagatcctccgccgaatcaaaatgaaaatcatagtatcctttgcctaaa 101  Q
    ||||| ||||||||| ||||| |||| ||| || |||||||||||||  |||||||| |||||| | ||||| || || |||||||| |||||||| | |    
T  17458648 tcttaacaaacccggattgaggttgactgtgcctgctgcccatattttccgtagatcatccgccaagtcaaagtggaagtcatagtaacctttgccgaga 17458549  T
Q  102 ggaaccattttccatgctgccattgttttccaacgctttcccaatttggtgcttaggtcacgtgcagaatatggtttctcacccttgtttagagtcaatc 201  Q
    || |||||||||||  | |||| ||||| |||| ||||||| | |||||| |||||||| ||||||||||| || || || |||||||| ||||| |||     
T  17458548 ggcaccattttccagcccgccaatgtttcccaaagctttcctattttggtacttaggtctcgtgcagaatacggcttatcccccttgttaagagttaatt 17458449  T
Q  202 tagcccgtaacgtattcttgaattcctctacac 234  Q
     | ||||||||| ||||||| |||||| |||||    
T  17458448 gatcccgtaacgaattcttgcattcctttacac 17458416  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 21591355 - 21591159
Alignment:
Q  3 cttatcaaacccggcttgagattgattgtaccagctgcccatatttgacgtagatcctccgccgaatcaaaatgaaaatcatagtatcctttgcctaaag 102  Q
    |||| |||||| |||||||| || |  || || |||||||||||||  |  || || |||||||| ||||| ||||| ||||| || |||||||||| ||    
T  21591355 cttaacaaacctggcttgaggttcaccgtgcctgctgcccatatttttctaaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagag 21591256  T
Q  103 gaaccattttccatgctgccattgttttccaacgctttcccaatttggtgcttaggtcacgtgcagaatatggtttctcacccttgtttagagtcaa 199  Q
    | |||||||||||| |||||  |||||||||   |||||| | |||| ||||||| ||||||||| |||||||||| || || ||||| || |||||    
T  21591255 gcaccattttccatcctgccgatgttttccatacctttccaattttgttgcttagatcacgtgcaaaatatggtttgtctcctttgttaagggtcaa 21591159  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 199
Target Start/End: Complemental strand, 14411472 - 14411336
Alignment:
Q  63 gccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaaccattttccatgctgccattgttttccaacgctttcccaatttggtgcttaggtcac 162  Q
    ||||| ||||| ||||| ||||| || |||||||||| ||| |||||||||||| |||||  |||||||||   ||| || | |||| ||||||| ||||    
T  14411472 gccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccattttccatcctgccgatgttttccataccttgccaattttgttgcttagatcac 14411373  T
Q  163 gtgcagaatatggtttctcacccttgtttagagtcaa 199  Q
    ||||| |||||||||| || || ||||| || |||||    
T  14411372 gtgcaaaatatggtttgtctcctttgttaagggtcaa 14411336  T

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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 11777177 - 11777400
Alignment:
Q  8 caaacccggcttgagattgattgtaccagctgcccatatttgacgtagatcctccgccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaacc 107  Q
    ||||||||||||||||||||||||||| |||||||||||||  |||||||| |||||||  ||||| ||||| |||||||| |||||| | | ||| |||    
T  11777177 caaacccggcttgagattgattgtacctgctgcccatatttttcgtagatcatccgccgtgtcaaagtgaaagtcatagtaacctttgtcgagaggcacc 11777276  T
Q  108 attttccatgctgccattgttttccaacgctttcccaatttggtgcttaggtcacgtgcagaatatggtttctcacccttgtttagagtcaatctagccc 207  Q
    ||||||||  | |||  |||||||||| ||||||| | |||||| ||||  |||| |||||| || || || || |||||||| |||||||| | |||||    
T  11777277 attttccagaccgccgatgttttccaatgctttcctattttggtacttaaatcacttgcagagtacggcttatcccccttgttaagagtcaagcgagccc 11777376  T
Q  208 gtaacgtattcttgaattcctcta 231  Q
     ||||| |||| || |||| ||||    
T  11777377 ttaacgcattcctgcattcttcta 11777400  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 33312556 - 33312430
Alignment:
Q  8 caaacccggcttgagattgattgtaccagctgcccatatttgacgtagatcctccgccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaacc 107  Q
    |||||| ||||||||||| || ||  | |||||||||||||    || |||||||||||| ||||||||||| ||||| || || ||||| | ||| |||    
T  33312556 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcacc 33312457  T
Q  108 attttccatgctgccattgttttccaa 134  Q
    ||||||||| ||||| |||| ||||||    
T  33312456 attttccatcctgcctttgtcttccaa 33312430  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 178
Target Start/End: Complemental strand, 13734604 - 13734486
Alignment:
Q  60 tccgccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaaccattttccatgctgccattgttttccaacgctttcccaatttggtgcttaggt 159  Q
    |||| ||| ||||| ||||| ||||| ||  ||||||||| ||  |||||||||||| |||||  |||||||||  ||||||| |  ||| ||||||| |    
T  13734604 tccgtcgagtcaaagtgaaagtcataatagtctttgcctagagtcaccattttccatcctgccgatgttttccatagctttccaatattgatgcttagat 13734505  T
Q  160 cacgtgcagaatatggttt 178  Q
     ||||||| ||||||||||    
T  13734504 gacgtgcaaaatatggttt 13734486  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 199
Target Start/End: Original strand, 3729492 - 3729631
Alignment:
Q  60 tccgccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaaccattttccatgctgccattgttttccaacgctttcccaatttggtgcttaggt 159  Q
    |||||||| ||||| ||||| ||||| || |||||||||| ||| |||||||||||| |||||  |||||||||   |||||| | |||| ||||||| |    
T  3729492 tccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccattttccatcctgccgatgttttccatacctttccaattttgttgcttagat 3729591  T
Q  160 cacgtgcagaatatggtttctcacccttgtttagagtcaa 199  Q
    |||||||| |||||||||| || || ||||| || |||||    
T  3729592 cacgtgcaaaatatggtttgtctcctttgttaagggtcaa 3729631  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 17181498 - 17181404
Alignment:
Q  105 accattttccatgctgccattgttttccaacgctttcccaatttggtgcttaggtcacgtgcagaatatggtttctcacccttgtttagagtcaa 199  Q
    |||||||||||| |||||  |||||||||   |||||| | |||| ||||||| ||||||||| |||||||||| || || ||||| || |||||    
T  17181498 accattttccatcctgccgatgttttccatacctttccaattttgttgcttagatcacgtgcaaaatatggtttgtctcctttgttaagggtcaa 17181404  T

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Target: scaffold0063 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 59546 - 59376
Alignment:
Q  8 caaacccggcttgagattgattgtaccagctgcccatatttgacgtagatcctccgccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaacc 107  Q
    ||||||||||||||| |||| ||| || |||||||||||||  |  || || || ||| ||||||| ||||| ||||| || |||||||||| ||| |||    
T  59546 caaacccggcttgaggttgactgtgcctgctgcccatatttttctcaggtcatctgccaaatcaaagtgaaagtcataatagcctttgcctagaggcacc 59447  T
Q  108 attttccatgctgccattgttttccaacgctttcccaatttggtgcttaggtcacgtgcagaatatggttt 178  Q
    ||||||||| ||  |  |||||||||  ||||| | | |||| ||||| | ||||||||||||||||||||    
T  59446 attttccatcctaacgatgttttccatagctttgcaattttgttgctttgatcacgtgcagaatatggttt 59376  T

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Target: scaffold0363 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 199
Target Start/End: Original strand, 7239 - 7375
Alignment:
Q  63 gccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaaccattttccatgctgccattgttttccaacgctttcccaatttggtgcttaggtcac 162  Q
    ||||| ||||| ||||| ||||| || |||||||||| ||| |||||||||||| |||||  |||||||||   ||| || | |||| ||||||| ||||    
T  7239 gccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccattttccatcctgccgatgttttccataccttgccaattttgttgcttagatcac 7338  T
Q  163 gtgcagaatatggtttctcacccttgtttagagtcaa 199  Q
    ||||| |||||||||| || || ||||| || |||||    
T  7339 gtgcaaaatatggtttgtctcctttgttaagggtcaa 7375  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 172
Target Start/End: Original strand, 19829923 - 19830089
Alignment:
Q  6 atcaaacccggcttgagattgattgtaccagctgcccatatttgacgtagatcctccgccgaatcaaaatgaaaatcatagtatcctttgcctaaaggaa 105  Q
    ||||||| ||||||||| |||| |||||  | |||||||||||  |||||||| || ||| | ||||| ||||| | |||||| |||||||| |  || |    
T  19829923 atcaaactcggcttgaggttgaatgtacatgttgcccatatttttcgtagatcatctgccaagtcaaagtgaaagttatagtaacctttgccaagtggca 19830022  T
Q  106 ccattttccatgctgccattgttttccaacgctttcccaatttggtgcttaggtcacgtgcagaata 172  Q
    |||||||||| |  |||  |||||||||| ||||||| | |||||| ||||  ||||||||| ||||    
T  19830023 ccattttccaggtcgccgatgttttccaatgctttcctattttggtacttaaatcacgtgcaaaata 19830089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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