View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0320_high_2 (Length: 437)
Name: NF0320_high_2
Description: NF0320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0320_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 26403498 - 26403091
Alignment:
| Q |
1 |
attaaaaattgtgattctctattcttttttacttgccaacatactgttatattgctcacaactataagtaacataagtatacagtttgagcatcttagga |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26403498 |
attaaaaattgtgattctctatgctttttaacttgccaacatactgttatgttgctcacaactataagtaacataagtatacagtttgagcatcttagga |
26403399 |
T |
|
| Q |
101 |
tccattttttgtattgcttggtcaccaacactatcacttgtagttgcactaccaccattgatgcggttcttcttaacatgaccaagatttgatttctcta |
200 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26403398 |
tccattttttgtgttgcttggtcac-aacactatcacttgtagttgcactaccaccattgatgctgttcttcttaacatgaccaagatttgatttctcta |
26403300 |
T |
|
| Q |
201 |
tattcatgttattgttgttgttgatgatgtcctcgtcttgtggtaattcttttactccactgatgcatgcctcttgattaccaaaggccagcactcttct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26403299 |
tattcatgttattgttgttgttgatgatgtccttgtcttgtggtaattcttttactccactgatgcatgcctcttgatttacaaaggccagcactcttct |
26403200 |
T |
|
| Q |
301 |
aagatggttgccatcgtcgaaatgctgaaaaagcactatgtaagaagggtttatcaactatgtttgaatttttatccactggtttctcttctagttgcac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26403199 |
aagatggttgccatcgtcgaaatgctgaaaaagcactatgtaagaagggtctatcaactatgtttgaatttttatccactggtttctcttctagttgcac |
26403100 |
T |
|
| Q |
401 |
catgtgtgt |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
26403099 |
catgtgtgt |
26403091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 157
Target Start/End: Complemental strand, 26395520 - 26395415
Alignment:
| Q |
52 |
ttgctcacaactataagtaacataagtatacagtttgagcatcttaggatccattttttgtattgcttggtcaccaacactatcacttgtagttgcacta |
151 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||| |||||||| |||| ||||||| |||||| ||||||| |||||||||| | || ||| || ||||||| |
|
|
| T |
26395520 |
ttgctcacaaatataagttacacaagtataccgtttgagcctctttggatccaaattttgtgttgcttgatcaccaacaccaacatttgcagatgcacta |
26395421 |
T |
|
| Q |
152 |
ccacca |
157 |
Q |
| |
|
|||||| |
|
|
| T |
26395420 |
ccacca |
26395415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 26402577 - 26402493
Alignment:
| Q |
134 |
tcacttgtagttgcactaccaccattgatgcggttcttcttaacatgaccaagatttgatttctctatattcatgttattgttgt |
218 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||| ||||||||| || || ||||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
26402577 |
tcacctgtagttgctctaccaccattcatgtggttcttctcaatataaccaagatttgatttttctatatttaagttattgttgt |
26402493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 521 times since January 2019
Visitors: 2773