View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0320_high_7 (Length: 258)
Name: NF0320_high_7
Description: NF0320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0320_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 11395946 - 11396172
Alignment:
| Q |
3 |
attttgacaaccttgcttgatattataatcatattgaatattataaatttcttgatgtgtataatatgattatgatcatgcacatttcacaaacacaaca |
102 |
Q |
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| T |
11395946 |
attttgacaaccttatttgatattataatcatattgaatattataaatttcttgatgtgtataatatgattatgatcatgcacatttcacaaacacaaca |
11396045 |
T |
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| Q |
103 |
tagcacaaggtgcaccaatataacaacaacacannnnnnncctcaaaagctcattacaaacaatttaaaaggcaaagaagcttgctgcggcgacagcaac |
202 |
Q |
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| T |
11396046 |
tagcacaaggtgcaccaatataacaacaacacatttatttcctcaaaagctcgttacaaacaatttaaaaggcaaagaagccagctgcggcgacagcaac |
11396145 |
T |
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| Q |
203 |
aactgcggagactttcaaagaagaagc |
229 |
Q |
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||| ||||||||||||||||||||||| |
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| T |
11396146 |
aacagcggagactttcaaagaagaagc |
11396172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 11380583 - 11380794
Alignment:
| Q |
18 |
cttgatattataatcatattgaatattataaatttcttgatgtgtataatatgattatgatcatgcacatttcacaaacacaacatagcacaaggtgcac |
117 |
Q |
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| T |
11380583 |
cttgatattataatcatattcaatattataaatttcttgatgtgtataatatgattatgatcatgcacatttcacaaacacaatatagcacaaggtgcac |
11380682 |
T |
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| Q |
118 |
caatataacaacaacacannnnnnncctcaaaagctcattacaaacaatttaaaaggcaaagaagcttgctgcggcgacagcaacaactgcggagacttt |
217 |
Q |
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| T |
11380683 |
caatataacaacaacacatttatttcctcaaaagctcgttacaaacaatttaaaaggcaaagtagccagctgcggcgacagcaacaacagcggagacttt |
11380782 |
T |
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| Q |
218 |
caaagaagaagc |
229 |
Q |
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| T |
11380783 |
caaagaagaagc |
11380794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 11403983 - 11404194
Alignment:
| Q |
18 |
cttgatattataatcatattgaatattataaatttcttgatgtgtataatatgattatgatcatgcacatttcacaaacacaacatagcacaaggtgcac |
117 |
Q |
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| T |
11403983 |
cttgatattataatcatattcaatattataaatttcttgatttgtataatactattatgatcatgcacatttcacaaacacaacatagcacaaggtgcac |
11404082 |
T |
|
| Q |
118 |
caatataacaacaacacannnnnnncctcaaaagctcattacaaacaatttaaaaggcaaagaagcttgctgcggcgacagcaacaactgcggagacttt |
217 |
Q |
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| T |
11404083 |
caatataacaacaacacatttatttcctcaaaagctcgttacaaacaatttaaaaggcaaagaagccagctgcggcgacagcaacaatagcggagacttt |
11404182 |
T |
|
| Q |
218 |
caaagaagaagc |
229 |
Q |
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|||||||||||| |
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| T |
11404183 |
caaagaagaagc |
11404194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 229
Target Start/End: Original strand, 11452723 - 11452872
Alignment:
| Q |
73 |
tatgatcatgcacatttcacaaacacaacatagcacaaggtgcaccaatataacaacaacacannnnnnncctcaaaagctcattacaaacaatttaaaa |
172 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |||| ||||||||| ||||||||| |
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| T |
11452723 |
tatgatcatgcacatttcacaaacacaacatagcacaaggtgcaccaatgttacaacaacaaatttatttcctc-------cattacaaataatttaaaa |
11452815 |
T |
|
| Q |
173 |
ggcaaagaagcttgctgcggcgacagcaacaactgcggagactttcaaagaagaagc |
229 |
Q |
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||||||||| | ||||||||||||||||||| ||||| ||||||| ||||||||| |
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| T |
11452816 |
ggcaaagaaaccaactgcggcgacagcaacaacagcggatactttcagagaagaagc |
11452872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 35401269 - 35401358
Alignment:
| Q |
48 |
aatttcttgatgtgtataat---atgattatgatcatgcacatttcacaaacacaacatagcacaaggtgcaccaatataacaacaacac |
134 |
Q |
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||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
35401269 |
aatttcttgatgtgtattattatatgaatatgatcatgcacatttcacaaacacaacatagcacaaggtgcaccaatattacaccaacac |
35401358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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