View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0320_high_8 (Length: 251)
Name: NF0320_high_8
Description: NF0320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0320_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 27085782 - 27086020
Alignment:
| Q |
1 |
ccctttaggtaaagtatcataatccttcaagttgcgtctactaccaactgcaatggttagcactgttaaaccattgctgctaagttttaaggctcttgct |
100 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
27085782 |
ccctttaggtaaagtatcataatcctttaagttgcgtctactaccaactgcaatggttagcgctgttaaaccattgcttttaagttttaaggctcttgct |
27085881 |
T |
|
| Q |
101 |
cttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttannnnnnnnnnnnnattcatcaaactcaatttaagtcctgttatcatttcac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | |||||||||||| |
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| T |
27085882 |
cttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcattttcattcatcaaactcaacttaagtcttcttatcatttcac |
27085981 |
T |
|
| Q |
201 |
cctctactttaaaacaatattgtttaattatcgtagtat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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| T |
27085982 |
cctctactttaaaacaatattgtttaattatcgtagtat |
27086020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 27041351 - 27041542
Alignment:
| Q |
48 |
ctgcaatggttagcactgttaaaccattgctgctaagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaacct |
147 |
Q |
| |
|
|||||||||| | ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27041351 |
ctgcaatggtcaacactgtttcaccattgctgttaagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaacct |
27041450 |
T |
|
| Q |
148 |
tannnnnnnnnnnnnattcatcaaactcaatttaagtcctgttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtat |
239 |
Q |
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| T |
27041451 |
cattttttcatttttattcatcaaactcaatttaagtcctgttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtat |
27041542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 27056617 - 27056764
Alignment:
| Q |
1 |
ccctttaggtaaagtatcataatccttcaagttgcgtctactaccaactgcaatggttagcactgttaaaccattgctgctaagttttaaggctcttgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||| |
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| T |
27056617 |
ccctttaggtaaagtatcataatcctccaagttgcgtctaataccaactgcaatggtcagcactgtttcaccattgctgttaagttttaaggctcttgct |
27056716 |
T |
|
| Q |
101 |
cttgacctccacacataacctgcaagcacttcaaaagttgtgaacctta |
149 |
Q |
| |
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||||||||| |||||||||||||||| || ||||||||||||||||||| |
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| T |
27056717 |
cttgacctctacacataacctgcaagtac-tcaaaagttgtgaacctta |
27056764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 27062659 - 27062880
Alignment:
| Q |
1 |
ccctttaggtaaagtatcataatccttcaagttgcgtctactaccaactgcaatggttagcactgttaaaccattgctgctaagttttaaggctcttgct |
100 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| ||||| |||||||| | |||||| |||| ||||||||||||||||||||||||||||| |
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| T |
27062659 |
ccctttaggtaaagtttcataatccatcaagtttcgtctgataccaactaacacatttagcattgttttgtcattgctgctaagttttaaggctcttgct |
27062758 |
T |
|
| Q |
101 |
cttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttannnnnnnnnnnnnattcatcaaactcaatttaagtcctgttatcatttcac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||| |||| | |
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| T |
27062759 |
cttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcg------ttcatcaaactcaacttaagtcttgttatcgtttcgc |
27062852 |
T |
|
| Q |
201 |
cctctactttaaaacaatattgtttaat |
228 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
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|
| T |
27062853 |
cctctactttaaaacaatattgcttaat |
27062880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 27069726 - 27069964
Alignment:
| Q |
1 |
ccctttaggtaaagtatcataatccttcaagttgcgtctactaccaactgcaatggttagcactgttaaaccattgctgctaagttttaaggctcttgct |
100 |
Q |
| |
|
|||||| |||||||||||| ||||| ||||||| ||||| |||||||| || | |||| |||| | ||||||||||||| ||||||||||||||| |
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| T |
27069726 |
ccctttcggtaaagtatcaaaatccatcaagttacgtctcataccaactaacatattcagcattgttttatcattgctgctaagctttaaggctcttgct |
27069825 |
T |
|
| Q |
101 |
cttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttannnnnnnnnnnnnattcatcaaactcaatttaagtcctgttatcatttcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||| || ||||||||||||||| ||||||| ||||||| |||| | |
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|
| T |
27069826 |
cttgacctccacacataacctgcaagaacttcaaaagttgtaaaccctattttttcacttttattcatcaaactcaacttaagtcttgttatcgtttcgc |
27069925 |
T |
|
| Q |
201 |
cctctactttaaaacaatattgtttaattatcgtagtat |
239 |
Q |
| |
|
|||||||||||||| ||||||| ||||| || ||||||| |
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| T |
27069926 |
cctctactttaaaagaatattgcttaataattgtagtat |
27069964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 27098452 - 27098596
Alignment:
| Q |
5 |
ttaggtaaagtatcataatccttcaagttgcgtctactaccaactgcaatggttagcactgttaaaccattgctgctaagttttaaggctcttgctcttg |
104 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||| |||| || ||||||| || |||||| |||||||||| |||||||||||||||||||||||| |
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| T |
27098452 |
ttaggtaaaggatcaaaatccttcaagttgcgtctaatacctgctacaatggtcagtactgtttcaccattgctgttaagttttaaggctcttgctcttg |
27098551 |
T |
|
| Q |
105 |
acctccacacataacctgcaagcacttcaaaagttgtgaacctta |
149 |
Q |
| |
|
| ||||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
27098552 |
atctccaaacataacctgcaattgattcaaaagttgtgaacctta |
27098596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 27105451 - 27105667
Alignment:
| Q |
5 |
ttaggtaaagtatcataatccttcaagttgcgtctactaccaactgcaatggttagcactgttaaaccattgctgctaagttttaaggctcttgctcttg |
104 |
Q |
| |
|
|||||||||| ||| |||||||||| ||||||||| ||||| || ||||||| | ||||||| ||||||| || |||||||||||||||||||||||| |
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|
| T |
27105451 |
ttaggtaaaggttcaaaatccttcaacttgcgtctaataccagctacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttg |
27105550 |
T |
|
| Q |
105 |
acctccacacataacctgcaagcacttcaaaagttgtgaaccttannnnnnnnnnnnnattcatcaaactcaatttaagtcctgttatcatttcaccctc |
204 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||| |
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|
| T |
27105551 |
atctccacacataacctgcaattgattcaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagctttgttaacatttcaccctc |
27105650 |
T |
|
| Q |
205 |
tactttaaaacaatatt |
221 |
Q |
| |
|
|| ||||||||||||| |
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|
| T |
27105651 |
cacattaaaacaatatt |
27105667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 27045787 - 27045834
Alignment:
| Q |
71 |
ccattgctgctaagttttaaggctcttgctcttgacctccacacataa |
118 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27045787 |
ccattgttgctaagttgtaaggctcttgctcttgacctccacacataa |
27045834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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