View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0320_low_1 (Length: 468)
Name: NF0320_low_1
Description: NF0320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0320_low_1 |
 | |
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| [»] scaffold0559 (1 HSPs) |
| | |
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| [»] scaffold0415 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 38 - 456
Target Start/End: Original strand, 40806465 - 40806873
Alignment:
| Q |
38 |
tatgaaattacacatcccaattcttttgaagctagtataatttatatttgaattaagaaagcaaagataataatatgaaattacacattctaacttttta |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40806465 |
tatgaaattacacatcccaattcttttgaagctagtataatttatatttgaattaagaaagcaaagataataatatgaaattacacattctaacttttta |
40806564 |
T |
|
| Q |
138 |
ccatctgactatatatcctatggcattaacttgatcctagtaaattgtatatatgtgtacatgtacatatctctctaattacagatcctgatgatgctca |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40806565 |
ccatctgactatatatcctatggcattaacttgatcctagtaaattttatatatgtgtacatgtacatatctctctaattacagatcctgatgatgctca |
40806664 |
T |
|
| Q |
238 |
gtgg-nnnnnnnnntcccggcgaagctcatgatctttttatgcaaactgagctaaatactagtcacaaaatttacaagacaacaaacaatggaaaatgtg |
336 |
Q |
| |
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|||| ||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40806665 |
gtggaaaaaaaagatccaggtgaagctcatgatctttttatgcaaactgagctaaatactagt-----------caagacaacaaacaatggaaaatgtg |
40806753 |
T |
|
| Q |
337 |
tacaaaatcaaaaagttttccgaatcatagccttcaaatgaattgtgcatatagtatgaaataactacattttaccgcatatcaatccgtagaccgttat |
436 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40806754 |
aacaaaatcaaaaagttttccgaatcatagccttcaaatgaattgtgcatatagtatgaaataactacattttaccgcatatcaatccgtagaccgttat |
40806853 |
T |
|
| Q |
437 |
caaagccattataagagaat |
456 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
40806854 |
caaagccattataagagaat |
40806873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 301 - 456
Target Start/End: Original strand, 40816976 - 40817129
Alignment:
| Q |
301 |
acaaaatttacaagacaacaaacaatggaaaatgtgtacaaaatcaaaaagttttccgaatcatagccttcaaatgaattgtgcatatagtatgaaataa |
400 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |||||||||| | |||||||||| |||||| ||||||||||||||| || | || |||||||| |
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| T |
40816976 |
acaaaatttacaagacatcaaacgatggaaaaagtgtacaaaagcgaaaagttttctgaatcagagccttcaaatgaatcgt--acatcatatgaaattt |
40817073 |
T |
|
| Q |
401 |
ctacattttaccgcatatcaatccgtagaccgttatcaaagccattataagagaat |
456 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| |
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|
| T |
40817074 |
ctacatttttccgcatatcaatccgtagaccgtaatcaaagccattataagggaat |
40817129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 258 - 451
Target Start/End: Original strand, 40804946 - 40805139
Alignment:
| Q |
258 |
gaagctcatgatctttttatgcaaactga-gctaaatactagtcacaaaatttacaagacaacaaacaatggaaaatgtgtacaaaatcaaaaagttttc |
356 |
Q |
| |
|
|||||||| ||||||||||| |||||| | || ||| |||| | |||||| |||||||||| |||||||||||||| |||||||||| | ||||||||| |
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|
| T |
40804946 |
gaagctcacgatctttttatacaaacttaagccaaacactaattacaaaacttacaagacagcaaacaatggaaaaagtgtacaaaagcgaaaagttttt |
40805045 |
T |
|
| Q |
357 |
cgaatcatagccttcaaatgaattg-tgcatatagtatgaaataactacattttaccgcatatcaatccgtagaccgttatcaaagccattataag |
451 |
Q |
| |
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||| | |||||||||||||||| ||| |||||||||| || ||||| | |||||||| |||| |||||||||||||||||||||||||| |
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|
| T |
40805046 |
gaaataagggccttcaaatgaattgttgc--atagtatgaagtatctacaataagccgcatattgatccatagaccgttatcaaagccattataag |
40805139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 185 - 381
Target Start/End: Original strand, 40811678 - 40811878
Alignment:
| Q |
185 |
tatatatgtgtacatgtacatatctctctaattacagatcctgatgatgctcagtggnnnnnnnnn---tcccggcgaagctcatgatctttttatgcaa |
281 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| ||| | |||||||||||||||||||| ||| |
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| T |
40811678 |
tatatatgtgtacttgtacatatctctataattacagttcctgatgatgctcagtaaaaaaaaagaagatcctgatgaagctcatgatctttttatacaa |
40811777 |
T |
|
| Q |
282 |
actgagctaaatactagtcacaaaa-tttacaagacaacaaacaatggaaaatgtgtacaaaatcaaaaagttttccgaatcatagccttcaaatgaatt |
380 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||||| || || |||||||| ||||| |||| |||||||||| || ||||| ||||| ||||||||| |
|
|
| T |
40811778 |
actgagctaaacactagttgcaaaactttacaagacatcagacgatggaaaaagtgtagaaaagcaaaaagtttgcccaatcagggccttaaaatgaatt |
40811877 |
T |
|
| Q |
381 |
g |
381 |
Q |
| |
|
| |
|
|
| T |
40811878 |
g |
40811878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 40804867 - 40804922
Alignment:
| Q |
185 |
tatatatgtgtacatgtacatatctctctaattacagatcctgatgatgctcagtg |
240 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |
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|
| T |
40804867 |
tatatatgtatacataaacatatctctctaattacatatcctgatgttgctcagtg |
40804922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 40816844 - 40816899
Alignment:
| Q |
185 |
tatatatgtgtacatgtacatatctctctaattacagatcctgatgatgctcagtg |
240 |
Q |
| |
|
||||||||| ||||| |||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
40816844 |
tatatatgtttacatatacatacctctctaattacagatcctgatgaaactcagtg |
40816899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 40825456 - 40825504
Alignment:
| Q |
258 |
gaagctcatgatctttttatgcaaactgagctaaatactagtcacaaaa |
306 |
Q |
| |
|
|||| |||||||||||||| |||||||||| |||||||| |||||||| |
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|
| T |
40825456 |
gaagttcatgatctttttacacaaactgagccaaatactaatcacaaaa |
40825504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 38 - 456
Target Start/End: Complemental strand, 8170 - 7758
Alignment:
| Q |
38 |
tatgaaattacacatcccaattcttttgaagctagtataatttatatttgaattaagaaagcaaagataataatatgaaattacacattctaacttttt- |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8170 |
tatgaaattacacatcccaattcttttgaagctagtataatttatatttgaattaagaaagcaaagataataatatgaaattacacattctaactttttt |
8071 |
T |
|
| Q |
137 |
accatctgactatatatcctatggcattaacttgatcctagtaaattgtatatatgtgtacatgtacatatctctctaattacagatcctgatgatgctc |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8070 |
accatctgactatatatcctatggcattaacttgatcctagtaaattttatatatgtgtacatgtacatatctctctaattacagatcctgatgatgctc |
7971 |
T |
|
| Q |
237 |
agtgg---nnnnnnnnntcccggcgaagctcatgatc-tttttatgcaaactgagctaaatactagtcacaaaatttacaagacaacaaacaatggaaaa |
332 |
Q |
| |
|
||||| ||| || ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7970 |
agtggaaaaaaaaaagatccaggtgaagctcatgatcttttttatgcaaactgagctaaatactagt-----------caagacaacaaacaatggaaaa |
7882 |
T |
|
| Q |
333 |
tgtgtacaaaatcaaaaagttttccgaatcatagccttcaaatgaattgtgcatatagtatgaaataactacattttaccgcatatcaatccgtagaccg |
432 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7881 |
tgtgaacaaaatcaaaaagttttccgaatcatagccttcaaatgaattgtgcatatagtatgaaataactacattttaccgcatatcaatccgtagaccg |
7782 |
T |
|
| Q |
433 |
ttatcaaagccattataagagaat |
456 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
7781 |
ttatcaaagccattataagagaat |
7758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 301 - 456
Target Start/End: Complemental strand, 15388 - 15235
Alignment:
| Q |
301 |
acaaaatttacaagacaacaaacaatggaaaatgtgtacaaaatcaaaaagttttccgaatcatagccttcaaatgaattgtgcatatagtatgaaataa |
400 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |||||||||| | |||||||||| |||||| ||||||||||||||| || | || |||||||| |
|
|
| T |
15388 |
acaaaatttacaagacatcaaacgatggaaaaagtgtacaaaagcgaaaagttttctgaatcagagccttcaaatgaatcgt--acatcatatgaaattt |
15291 |
T |
|
| Q |
401 |
ctacattttaccgcatatcaatccgtagaccgttatcaaagccattataagagaat |
456 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
15290 |
ctacatttttccgcatatcaatccgtagaccgtaatcaaagccattataagggaat |
15235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 15520 - 15465
Alignment:
| Q |
185 |
tatatatgtgtacatgtacatatctctctaattacagatcctgatgatgctcagtg |
240 |
Q |
| |
|
||||||||| ||||| |||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
15520 |
tatatatgtttacatatacatacctctctaattacagatcctgatgaaactcagtg |
15465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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