View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0320_low_11 (Length: 266)

Name: NF0320_low_11
Description: NF0320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0320_low_11
NF0320_low_11
[»] chr6 (9 HSPs)
chr6 (30-170)||(19478791-19478931)
chr6 (33-170)||(17289607-17289741)
chr6 (33-170)||(10485755-10485890)
chr6 (33-167)||(17280865-17280994)
chr6 (68-170)||(14450601-14450698)
chr6 (38-170)||(11956064-11956191)
chr6 (38-170)||(29326257-29326383)
chr6 (38-167)||(3902883-3903006)
chr6 (38-169)||(13660457-13660581)
[»] chr2 (4 HSPs)
chr2 (33-170)||(42915219-42915356)
chr2 (33-170)||(5089734-5089872)
chr2 (170-266)||(32006904-32007000)
chr2 (38-100)||(43111535-43111597)
[»] chr1 (10 HSPs)
chr1 (30-171)||(39746673-39746814)
chr1 (33-170)||(31289411-31289547)
chr1 (33-170)||(38734782-38734919)
chr1 (33-170)||(13891461-13891598)
chr1 (33-170)||(14582404-14582541)
chr1 (33-170)||(26650428-26650564)
chr1 (76-170)||(5602170-5602264)
chr1 (33-174)||(10106697-10106839)
chr1 (38-170)||(12179363-12179494)
chr1 (33-66)||(19406285-19406318)
[»] chr4 (5 HSPs)
chr4 (33-171)||(10119805-10119943)
chr4 (33-170)||(24490750-24490882)
chr4 (33-170)||(653644-653782)
chr4 (70-170)||(8082773-8082865)
chr4 (38-103)||(10318245-10318310)
[»] chr8 (7 HSPs)
chr8 (33-170)||(19430689-19430826)
chr8 (33-170)||(19566838-19566975)
chr8 (37-170)||(19436135-19436268)
chr8 (37-170)||(19572284-19572417)
chr8 (30-171)||(33616063-33616204)
chr8 (33-171)||(31031214-31031350)
chr8 (33-170)||(13584826-13584968)
[»] chr7 (8 HSPs)
chr7 (33-170)||(33226975-33227113)
chr7 (33-170)||(9973925-9974062)
chr7 (33-170)||(24529046-24529183)
chr7 (33-170)||(7357990-7358127)
chr7 (37-170)||(28291842-28291975)
chr7 (112-170)||(10437398-10437456)
chr7 (112-170)||(10451108-10451166)
chr7 (42-170)||(47762377-47762497)
[»] scaffold0132 (2 HSPs)
scaffold0132 (33-170)||(2421-2558)
scaffold0132 (33-170)||(10381-10518)
[»] chr3 (10 HSPs)
chr3 (33-170)||(33088616-33088753)
chr3 (37-170)||(53120181-53120314)
chr3 (33-170)||(13022705-13022842)
chr3 (33-170)||(38436270-38436407)
chr3 (33-142)||(20811068-20811177)
chr3 (33-131)||(26962680-26962774)
chr3 (36-170)||(11777233-11777360)
chr3 (38-170)||(26929373-26929498)
chr3 (75-170)||(3448667-3448759)
chr3 (40-102)||(6025740-6025802)
[»] scaffold0011 (2 HSPs)
scaffold0011 (36-170)||(7539-7674)
scaffold0011 (37-170)||(2286-2420)
[»] scaffold0067 (1 HSPs)
scaffold0067 (41-170)||(33305-33428)
[»] chr5 (3 HSPs)
chr5 (33-170)||(13581981-13582119)
chr5 (33-172)||(14374780-14374919)
chr5 (33-170)||(7805729-7805867)


Alignment Details
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 30 - 170
Target Start/End: Original strand, 19478791 - 19478931
Alignment:
Q  30 gttactctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgttttt 129  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19478791 gttactctacccttatataaacactttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttacattgtgttttt 19478890  T
Q  130 cttatccaattttctcactagattcaactagtgttccaaca 170  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19478891 cttatccaattttctcactagattcaactagtgttccaaca 19478931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 33 - 170
Target Start/End: Complemental strand, 17289741 - 17289607
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||| |    
T  17289741 actctacccttatataaacacttgcttgttggtgtggctcaccaatgtgggacatttttaagtcacaca--cacactagttcttacattgtgtttttc-t 17289645  T
Q  133 atccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17289644 atccaattttctcactagattcaactagtgttccaaca 17289607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 10485755 - 10485890
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| |    
T  10485755 actctacccttatataaacacttgctagttggtgtggctcaccaatgtggaacatttttaagtctcaca--cacactagttcttacattgtgtttttc-t 10485851  T
Q  133 atccaa-ttttctcactagattcaactagtgttccaaca 170  Q
    |||||| ||||||||||||||| ||||||| ||||||||    
T  10485852 atccaatttttctcactagatttaactagtattccaaca 10485890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 33 - 167
Target Start/End: Complemental strand, 17280994 - 17280865
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    ||||||||||||||||||||||| ||||||| |  |||||||||||||| |||||||||||||||||    |||||||||||||||||| | |||||| |    
T  17280994 actctacccttatataaacacttgctagttgatatggctcaccaatgtgaaacatttttaagtcaca----cacactagttcttacattctatttttc-t 17280900  T
Q  133 atccaattttctcactagattcaactagtgttcca 167  Q
    ||||||||||||||||||||||||||| |||||||    
T  17280899 atccaattttctcactagattcaactaatgttcca 17280865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 14450698 - 14450601
Alignment:
Q  68 ggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaattttctcactagattcaactagtgttcca 167  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||| |||||||||||||||||    
T  14450698 ggctcatcaatgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaatt-----actacattcaactagtgttcca 14450604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 11956191 - 11956064
Alignment:
Q  38 acccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttcttatcca 137  Q
    ||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||| |||  ||||||||||||||| |||  |||||| ||||||    
T  11956191 acccttatataaacactttctagttagtgtggctcacctatgtggaacatttttaagtcataca--cacactagttcttaccttgcatttttc-tatcca 11956095  T
Q  138 attttctcactagattcaactagtgttccaaca 170  Q
    | ||   ||||||| ||||||||||||||||||    
T  11956094 actt--ccactagaatcaactagtgttccaaca 11956064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 29326257 - 29326383
Alignment:
Q  38 acccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttcttatcca 137  Q
    |||||||||||||||||| |||||||||| | ||||||||||||  ||||||||||||    ||| ||||||| ||||||||| ||||||||| ||||||    
T  29326257 acccttatataaacacttgctagttggtgtgcctcaccaatgtgagacatttttaagt----cacgcacactaattcttacatagtgtttttc-tatcca 29326351  T
Q  138 attttctcactagattcaactagtgttccaaca 170  Q
    | ||| |||||||| | ||||||||||||||||    
T  29326352 acttt-tcactagaattaactagtgttccaaca 29326383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 3902883 - 3903006
Alignment:
Q  38 acccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttcttatcca 137  Q
    |||||||||||||||||| |||||||||| |  |||||||||| | ||||||||||||| ||    |||||||||||| |||| ||||||||| ||||||    
T  3902883 acccttatataaacacttgctagttggtgtgattcaccaatgtaggacatttttaagtctca----cacactagttctcacatagtgtttttc-tatcca 3902977  T
Q  138 attttctcactagattcaactagtgttcca 167  Q
    ||||| |||||||| | ||||||| |||||    
T  3902978 atttt-tcactagaattaactagtattcca 3903006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 13660457 - 13660581
Alignment:
Q  38 acccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttcttatcca 137  Q
    |||||||||||||||||| |||||| ||| ||||||||||| |   | ||||||||||||||    ||||||||||||||| || |||||||| ||||||    
T  13660457 acccttatataaacacttgctagttagtgtggctcaccaatataagatatttttaagtcaca----cacactagttcttaccttatgtttttc-tatcca 13660551  T
Q  138 attttctcactagattcaactagtgttccaac 169  Q
    | ||   ||||||| | |||||||||||||||    
T  13660552 actt--ccactagaattaactagtgttccaac 13660581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 42915219 - 42915356
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42915219 actctacccttatataaacactttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttctt 42915318  T
Q  133 atccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42915319 atccaattttctcactagattcaactagtgttccaaca 42915356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 5089734 - 5089872
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacattttt-aagtcacacactcacactagttcttacattgtgtttttct 131  Q
    |||||| |||||||||||||||||||| |||||| ||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||||||||||    
T  5089734 actctatccttatataaacactttctaattggtgtggctcaccaatgtgggacattttttaagtcccgcactcacactagttcttacattgtgtttttct 5089833  T
Q  132 tatccaattttctcactagattcaactagtgttccaaca 170  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  5089834 tatccaattttctcactaaattcaactagtgtttcaaca 5089872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 32006904 - 32007000
Alignment:
Q  170 ataaagaaagcactatatttttcttaattacactcaatttcttcatcttgcttatgttgttcaattatagcatctcttggttcctatcaacttctct 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32006904 ataaagaaagcactatatttttcttaattacactcaatttcttcatcttgcttatgttgttcaattatagcatctcttggttcctatcaaattctct 32007000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 43111597 - 43111535
Alignment:
Q  38 acccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacac 100  Q
    |||||||||||||||||| |||||||||| ||||||| ||| ||| |||||||||||||||||    
T  43111597 acccttatataaacacttgctagttggtgtggctcactaatatgggacatttttaagtcacac 43111535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 30 - 171
Target Start/End: Complemental strand, 39746814 - 39746673
Alignment:
Q  30 gttactctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgttttt 129  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  39746814 gttactctacccttatataaacactttctagttggtgtggctcaccaatatgaaacatttttaagtcacacactcacactagttcttacattgtgttttt 39746715  T
Q  130 cttatccaattttctcactagattcaactagtgttccaacat 171  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  39746714 cttatccaattttctcactagattcaactagtgttccaacat 39746673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 31289411 - 31289547
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31289411 actctacccttatataaacactttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttacattgtg-ttttctt 31289509  T
Q  133 atccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31289510 atccaattttctcactagattcaactagtgttccaaca 31289547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 38734782 - 38734919
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38734782 actctacccttatataaacactttctagttggtgtggctcaccaatatgggacatttttaagtcacacactcacactagttcttatattgtgtttttctt 38734881  T
Q  133 atccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  38734882 atccaattttctcactagatttaactagtgttccaaca 38734919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 13891461 - 13891598
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  13891461 actcttcccttatataaacactttctagttggtgtggctcaccaatgtgggacatttttaagtcacacacttacactagttcttatattgtgtttttctt 13891560  T
Q  133 atccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  13891561 atccaattttctcactagatttaactagtgttccaaca 13891598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 14582404 - 14582541
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    |||||||||||||||||| | ||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14582404 actctacccttatataaaaaatttctagttggtgtggttcaccaatgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttctt 14582503  T
Q  133 atccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  14582504 atccaattttctcactagatttaactagtgttccaaca 14582541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 33 - 170
Target Start/End: Complemental strand, 26650564 - 26650428
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    ||||||||||||||||| ||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26650564 actctacccttatataa-cactttctagttgatgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttctt 26650466  T
Q  133 atccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  26650465 atccaattttctcactagatttaactagtgttccaaca 26650428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 5602264 - 5602170
Alignment:
Q  76 aatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5602264 aatgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaattttctcactaaattcaactagtgttccaaca 5602170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 174
Target Start/End: Original strand, 10106697 - 10106839
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgt-gtttttct 131  Q
    ||||| ||||||||||||||||| |||||||| | | || |||||||||| ||||||||||||||||||  ||||||||||| ||  | ||  || ||||    
T  10106697 actctccccttatataaacacttactagttggggtgactaaccaatgtgggacatttttaagtcacacaaccacactagttcctatgtagtaattattct 10106796  T
Q  132 tatccaattttctcactagattcaactagtgttccaacataaa 174  Q
     |  |||||||||||||||||| ||||||||||||||||||||    
T  10106797 caatcaattttctcactagattgaactagtgttccaacataaa 10106839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 12179363 - 12179494
Alignment:
Q  38 acccttatataaacactttctagttggtgg----ggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctta 133  Q
    |||||||||||||||||| ||||||||||     ||||||||||||| | | |||||||||||||||||    |||||||||||||||||||||||| ||    
T  12179363 acccttatataaacacttgctagttggtgtacgtggctcaccaatgtaggatatttttaagtcacacac----actagttcttacattgtgtttttc-ta 12179457  T
Q  134 tccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||| | |||||| | |||||| |||||||||    
T  12179458 tccaatttttttactagaattaactagggttccaaca 12179494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 19406318 - 19406285
Alignment:
Q  33 actctacccttatataaacactttctagttggtg 66  Q
    ||||||||||||||||||||||||||||||||||    
T  19406318 actctacccttatataaacactttctagttggtg 19406285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 33 - 171
Target Start/End: Complemental strand, 10119943 - 10119805
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10119943 actctacccttatataaacactttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttctt 10119844  T
Q  133 atccaattttctcactagattcaactagtgttccaacat 171  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  10119843 atccaattttctcacgagattcaactagtgttccaacat 10119805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 24490750 - 24490882
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    ||||||||||||||||||||||| |||||||||| ||||| ||||| ||| |||||||||||| |||    ||||||||||||||||||||||||||| |    
T  24490750 actctacccttatataaacacttgctagttggtgtggctctccaatatgggacatttttaagttaca----cacactagttcttacattgtgtttttc-t 24490844  T
Q  133 atccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  24490845 atccaattttctcactagatttaactagtgttccaaca 24490882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 653644 - 653782
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtg-tttttct 131  Q
    ||||| ||||||||||||||||| |||||||| | | || |||||||||| |||||||||||||||| |  ||||||||||||||  | ||| || ||||    
T  653644 actcttcccttatataaacacttactagttggggtgactaaccaatgtgggacatttttaagtcacataaccacactagttcttatgtagtgattattct 653743  T
Q  132 tatccaattttctcactagattcaactagtgttccaaca 170  Q
     ||||||||||||||||||||| ||||||||||||||||    
T  653744 catccaattttctcactagattaaactagtgttccaaca 653782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 170
Target Start/End: Complemental strand, 8082865 - 8082773
Alignment:
Q  70 ctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaattttctcactagattcaactagtgttccaac 169  Q
    |||||||||||||  |||||||||||||||||||      ||||||||||| ||||||||| ||||||| ||| |||||||| | |||||||||||||||    
T  8082865 ctcaccaatgtggggcatttttaagtcacacact------agttcttacatagtgtttttc-tatccaacttt-tcactagaattaactagtgttccaac 8082774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 10318310 - 10318245
Alignment:
Q  38 acccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacact 103  Q
    |||||||||||| |||||  ||||||||| |||||| |||||||  |||||||||| |||||||||    
T  10318310 acccttatataatcacttgttagttggtgtggctcatcaatgtgagacatttttaaatcacacact 10318245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 19430689 - 19430826
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19430689 actctacccttatataaacactttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctt 19430788  T
Q  133 atccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  19430789 atccaattttctcactagatttaactagtgttccaaca 19430826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 19566838 - 19566975
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19566838 actctacccttatataaacactttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctt 19566937  T
Q  133 atccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  19566938 atccaattttctcactagatttaactagtgttccaaca 19566975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 37 - 170
Target Start/End: Original strand, 19436135 - 19436268
Alignment:
Q  37 tacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttcttatcc 136  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19436135 tacccttatataaacactttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatcc 19436234  T
Q  137 aattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||||| ||||||||||||||||    
T  19436235 aattttctcactagatttaactagtgttccaaca 19436268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 37 - 170
Target Start/End: Original strand, 19572284 - 19572417
Alignment:
Q  37 tacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttcttatcc 136  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19572284 tacccttatataaacactttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatcc 19572383  T
Q  137 aattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||||| ||||||||||||||||    
T  19572384 aattttctcactagatttaactagtgttccaaca 19572417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 30 - 171
Target Start/End: Complemental strand, 33616204 - 33616063
Alignment:
Q  30 gttactctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgttttt 129  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||| |||| ||||||||||||||||| ||||| |||||    
T  33616204 gttactctacccttatataaacactttctagttggtgtggctcaccaatgtgagacatttttaagccacatactcacactagttcttatattgtattttt 33616105  T
Q  130 cttatccaattttctcactagattcaactagtgttccaacat 171  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  33616104 cttatccaattttctcactagatttaactaatgttccaacat 33616063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 33 - 171
Target Start/End: Original strand, 31031214 - 31031350
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    |||||||||||||||| ||  ||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||| | ||||||||||||    
T  31031214 actctacccttatatatac--tttctagttggtgtggctcaccaatgtgagacatttttaagtcacacactcacactagttcttataatgtgtttttctt 31031311  T
Q  133 atccaattttctcactagattcaactagtgttccaacat 171  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  31031312 atccaattttctcattagatttaactagtgttccaacat 31031350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 13584826 - 13584968
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtg-----ttt 127  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| ||||||||| |||||| ||||||     |||    
T  13584826 actctacccgtatataaacactttctagttggtgtggctcaccaatgtgggacatttttaaatcacacgctcacactaattcttatattgtgtttttttt 13584925  T
Q  128 ttcttatccaattttctcactagattcaactagtgttccaaca 170  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  13584926 ttcttatccaattttctcactagatttaactagtgttccaaca 13584968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 33226975 - 33227113
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgttttt-ct 131  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33226975 actctacccttatataaacactttctagttggtgtgactcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttcct 33227074  T
Q  132 tatccaattttctcactagattcaactagtgttccaaca 170  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  33227075 tatccaattttctcactagatttaactagtgttccaaca 33227113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 9973925 - 9974062
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9973925 actctacccttatattaacaatttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacattagttcttacattgtgtttttctt 9974024  T
Q  133 atccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9974025 atccaattttctcactagattcaactagtgttccaaca 9974062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 24529046 - 24529183
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| | | |||||||||||||||||||||||||||||||| ||| ||||||||||    
T  24529046 actctacccttatataaacactttctagttggtgtggctcaccaatgtaggatatttttaagtcacacactcacactagttcttatattatgtttttctt 24529145  T
Q  133 atccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  24529146 atccaattttctcactagatttaactagtgttccaaca 24529183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 7357990 - 7358127
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  7357990 actctacccttatataaacactttctaattggtgtggctcaccaatatgggacatttttaagtcacacgctcacactagttcttgcattgtgtttttctt 7358089  T
Q  133 atccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  7358090 atccaattttctcaaaagattcaactagtgttccaaca 7358127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 37 - 170
Target Start/End: Complemental strand, 28291975 - 28291842
Alignment:
Q  37 tacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttcttatcc 136  Q
    ||||||||||||||||||||||||||||||  |||||||||| ||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  28291975 tacccttatataaacactttctagttggtgtagctcaccaatatgggacatttttaagtcacacgctcacactagttcttatattgtgtttttcttatcc 28291876  T
Q  137 aattttctcactagattcaactagtgttccaaca 170  Q
    |||||||| | |||||| ||||||||||||||||    
T  28291875 aattttctaattagatttaactagtgttccaaca 28291842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 10437398 - 10437456
Alignment:
Q  112 ttcttacattgtgtttttcttatccaattttctcactagattcaactagtgttccaaca 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10437398 ttcttacattgtgtttttcttatccaattttctcactagattcaactagtgttccaaca 10437456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 10451108 - 10451166
Alignment:
Q  112 ttcttacattgtgtttttcttatccaattttctcactagattcaactagtgttccaaca 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10451108 ttcttacattgtgtttttcttatccaattttctcactagattcaactagtgttccaaca 10451166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 170
Target Start/End: Original strand, 47762377 - 47762497
Alignment:
Q  42 ttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaattt 141  Q
    ||||||||||| || |||||||||| ||||||| ||||||||||||||||||||||      ||||||||||||||||||||||||||| ||| ||||||    
T  47762377 ttatataaacatttactagttggtgtggctcactaatgtggaacatttttaagtca------cacactagttcttacattgtgtttttc-tattcaattt 47762469  T
Q  142 tctcactagattcaactagtgttccaaca 170  Q
    | |||||||| | | ||||||||||||||    
T  47762470 t-tcactagacttagctagtgttccaaca 47762497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 33 - 170
Target Start/End: Complemental strand, 2558 - 2421
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    |||||||||||||||||| ||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2558 actctacccttatataaatactttctagttggtgtggctcaacaatgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctt 2459  T
Q  133 atccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2458 atccaattttctcactagattcaactagtgttccaaca 2421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 33 - 170
Target Start/End: Complemental strand, 10518 - 10381
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    |||||||||||||||||| ||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10518 actctacccttatataaatactttctagttggtgtggctcaacaatgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctt 10419  T
Q  133 atccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10418 atccaattttctcactagattcaactagtgttccaaca 10381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 33 - 170
Target Start/End: Complemental strand, 33088753 - 33088616
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33088753 actctacccttatataaacactttctagttggtttggctcaccaatgtgggacatttttaagtcacacactcacactagttcttacattatgtttttctt 33088654  T
Q  133 atccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  33088653 atccaattttctcactagatttaactagtgttccaaca 33088616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 37 - 170
Target Start/End: Original strand, 53120181 - 53120314
Alignment:
Q  37 tacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttcttatcc 136  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  53120181 tacccttatataaacactttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttacatcgtgtttttcttatcc 53120280  T
Q  137 aattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||||| ||||||||||||||||    
T  53120281 aattttctcactagatttaactagtgttccaaca 53120314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 13022705 - 13022842
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    ||||| ||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13022705 actcttcccttatataaacactttctaattggtgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctt 13022804  T
Q  133 atccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  13022805 atccaattttctcactagatttaactagtgttccaaca 13022842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 33 - 170
Target Start/End: Complemental strand, 38436407 - 38436270
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    |||||||||||||||||||||||| |||||| || ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38436407 actctacccttatataaacactttttagttgatgtggctcaccaatgtgggacatttttaagtcacacgctcacactagttcttacattgtgtttttctt 38436308  T
Q  133 atccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||||||||| |||| ||| |||||||    
T  38436307 atccaattttctcactagatttaactggtgctccaaca 38436270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 33 - 142
Target Start/End: Original strand, 20811068 - 20811177
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttctt 132  Q
    |||||||| ||||||||||||||| |||||| || || | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20811068 actctacctttatataaacactttttagttgatgtggtttaccaatgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttctt 20811167  T
Q  133 atccaatttt 142  Q
    ||||||||||    
T  20811168 atccaatttt 20811177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 33 - 131
Target Start/End: Original strand, 26962680 - 26962774
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttct 131  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||  || |||||||||||||    |||||||||| |||||||||||||||||    
T  26962680 actctacccttatataaacactttctagttggtgtggctcaccaatgtgagacttttttaagtcaca----cacactagtttttacattgtgtttttct 26962774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 170
Target Start/End: Original strand, 11777233 - 11777360
Alignment:
Q  36 ctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttcttatc 135  Q
    |||||||||||||||||||| |||||| ||| ||||||||||||||| ||||||||||||||||    |||||||||||||||  |||||||||| ||||    
T  11777233 ctacccttatataaacacttgctagttagtgtggctcaccaatgtgggacatttttaagtcaca----cacactagttcttaccatgtgtttttc-tatc 11777327  T
Q  136 caattttctcactagattcaactagtgttccaaca 170  Q
    ||| ||   ||||||| ||||| ||||||||||||    
T  11777328 caactt--ccactagaatcaacgagtgttccaaca 11777360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 26929373 - 26929498
Alignment:
Q  38 acccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttcttatcca 137  Q
    |||||||||||||||||| ||||||||||   |||||||||||| |||||||||||||||      |||||||||||||||||| |||||||| ||||||    
T  26929373 acccttatataaacacttgctagttggtgtaactcaccaatgtgaaacatttttaagtca------cacactagttcttacattatgtttttc-tatcca 26929465  T
Q  138 attttctcactagattcaactagtgttccaaca 170  Q
    ||||| | |||||| | ||||| ||||||||||    
T  26929466 attttttgactagaattaactaatgttccaaca 26929498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 3448667 - 3448759
Alignment:
Q  75 caatgtggaacatttttaagtcacacactcacactagttcttaca---ttgtgtttttcttatccaattttctcactagattcaactagtgttccaaca 170  Q
    ||||||| ||||||||||||||||||||    |||||||||||||   ||||||| |   |||||||||||||||||||||| ||||||||||| ||||    
T  3448667 caatgtgaaacatttttaagtcacacac----actagttcttacaatattgtgttatc--tatccaattttctcactagatttaactagtgttcaaaca 3448759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 6025740 - 6025802
Alignment:
Q  40 ccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacac 102  Q
    |||||||||||||||| |||||| ||| | ||||||||||||  |||||||||| ||||||||    
T  6025740 ccttatataaacacttgctagttagtgtgactcaccaatgtgagacatttttaaatcacacac 6025802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 36 - 170
Target Start/End: Original strand, 7539 - 7674
Alignment:
Q  36 ctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttt-taagtcacacactcacactagttcttacattgtgtttttcttat 134  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  7539 ctacccttatataaacactttctagttggtgtggctcaccaatgtgggacattttttaagtcacacactcacactagttctttcattgtgtttttcttat 7638  T
Q  135 ccaattttctcactagattcaactagtgttccaaca 170  Q
    |||||||||||||||| |||||||||||||||||||    
T  7639 ccaattttctcactaggttcaactagtgttccaaca 7674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 37 - 170
Target Start/End: Original strand, 2286 - 2420
Alignment:
Q  37 tacccttatataaacactttctagttggtggggctcaccaatgtggaacatttt-taagtcacacactcacactagttcttacattgtgtttttcttatc 135  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  2286 tacccttatataaacactttctagttggtgtggctcaccaatgtgggacattttttaagtcacacactcacactagttctttcattgtgtttttcttatc 2385  T
Q  136 caattttctcactagattcaactagtgttccaaca 170  Q
    ||||||||||||||| |||||||||||||||||||    
T  2386 caattttctcactaggttcaactagtgttccaaca 2420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 41 - 170
Target Start/End: Complemental strand, 33428 - 33305
Alignment:
Q  41 cttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaatt 140  Q
    ||||||||||||||| |||||||||| |||||| |||||||| ||||||||||||||||    ||||||||||||||||||||||||||| |||||||||    
T  33428 cttatataaacacttgctagttggtgtggctcatcaatgtgggacatttttaagtcaca----cacactagttcttacattgtgtttttc-tatccaatt 33334  T
Q  141 ttctcactagattcaactagtgttccaaca 170  Q
    || |||||||| | ||||||| ||||||||    
T  33333 tt-tcactagaattaactagtattccaaca 33305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 33 - 170
Target Start/End: Complemental strand, 13582119 - 13581981
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtg-tttttct 131  Q
    ||||| ||||||||||||||||| |||||||| | | || |||||||||| |||||||||||||||| |  ||||||||||||||  | ||| || ||||    
T  13582119 actcttcccttatataaacacttactagttggggtgactaaccaatgtgggacatttttaagtcacataaccacactagttcttatgtagtgattattct 13582020  T
Q  132 tatccaattttctcactagattcaactagtgttccaaca 170  Q
     ||||||||||||||||||||| ||||||||||||||||    
T  13582019 catccaattttctcactagattgaactagtgttccaaca 13581981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 172
Target Start/End: Original strand, 14374780 - 14374919
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtg-tttttct 131  Q
    ||||| |||||||||||||||||||||||||| | | || |||||||||| ||||||||||||||||||  ||||||||||||||  | ||| || ||||    
T  14374780 actcttcccttatataaacactttctagttggggtgactaaccaatgtgggacatttttaagtcacacaaccacactagttctta-gtagtgcttattct 14374878  T
Q  132 tatccaattttctcactagattcaactagtgttccaacata 172  Q
     ||||||  ||||||||||||| ||||||||||||||||||    
T  14374879 catccaaacttctcactagattgaactagtgttccaacata 14374919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 7805729 - 7805867
Alignment:
Q  33 actctacccttatataaacactttctagttggtggggctcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgt-gtttttct 131  Q
    ||||| ||||||||||||||||| |||||||| | | || |||||||||| ||||||||||||||||||  ||||||||||| ||  | ||  || | ||    
T  7805729 actcttcccttatataaacacttactagttggggtgactaaccaatgtgggacatttttaagtcacacaaccacactagttcctatgtagtaattatcct 7805828  T
Q  132 tatccaattttctcactagattcaactagtgttccaaca 170  Q
     |  |||||||||||||||||| ||||||||||||||||    
T  7805829 caatcaattttctcactagattgaactagtgttccaaca 7805867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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