View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0320_low_9 (Length: 297)
Name: NF0320_low_9
Description: NF0320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0320_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 27041295 - 27041024
Alignment:
| Q |
1 |
agctcaacgaaatgccactctatgaaaccattaagctgattaaagagactaaaaatattgctttcactgctgattatgttacaaactcaataaactcttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27041295 |
agctcaacgaaatgccactctatgaaaccattaagctgattaaagagactaaaaatattgctttcactgctgattatgttacaaactcaataaactcttt |
27041196 |
T |
|
| Q |
101 |
ggaattggaagctagtggtgcagtaacgtctctaagtgagttgaaacatttgggttttcaggaaaatttaaattttgaagtctatgaattagtgaatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27041195 |
ggaattggaagctagtggtgcagtaacgtctctaagtgagttgaaacatttgggttttcaggaaaatttaaattttgaaggctatgaattagtgaatttt |
27041096 |
T |
|
| Q |
201 |
gtacctgcaccatgcaagatgcttgccaccatcgatacgtgttttttcttttctcctaataaacttgatgat |
272 |
Q |
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|| ||||||||||||||||||||| |||| ||||||||||| |||||| ||||||||||||||||||||| |
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| T |
27041095 |
ttaactgcaccatgcaagatgcttggcaccctcgatacgtgtattttctcatctcctaataaacttgatgat |
27041024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 2 - 272
Target Start/End: Complemental strand, 27085731 - 27085461
Alignment:
| Q |
2 |
gctcaacgaaatgccactctatgaaaccattaagctgattaaagagactaaaaatattgctttcactgctgattatgttacaaactcaataaactctttg |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27085731 |
gctcaacgaaatgccactctatgaaaccattaagctgattaaagagactaaaaatattgctttcactgctgattatgttacaaactcaataaactctttg |
27085632 |
T |
|
| Q |
102 |
gaattggaagctagtggtgcagtaacgtctctaagtgagttgaaacatttgggttttcaggaaaatttaaattttgaagtctatgaattagtgaattttg |
201 |
Q |
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| T |
27085631 |
gaattggaagctagtggtgcagtaacgtctctaagtgagttgaaacatttgggttttcaggaaaatttaaattttgaaggctatgaattagtgaattttt |
27085532 |
T |
|
| Q |
202 |
tacctgcaccatgcaagatgcttgccaccatcgatacgtgttttttcttttctcctaataaacttgatgat |
272 |
Q |
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|| ||||||||||||||||||||| |||| ||||||||||| |||||| ||||||||||||||||||||| |
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| T |
27085531 |
taactgcaccatgcaagatgcttggcaccctcgatacgtgtattttctcatctcctaataaacttgatgat |
27085461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 100 - 269
Target Start/End: Complemental strand, 27056438 - 27056268
Alignment:
| Q |
100 |
tggaattggaagctagtggtgcagtaacgtctctaagtgagttgaaacatttgggttttcaggaaaatttaaattttgaagtctatgaattagtgaattt |
199 |
Q |
| |
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|||||||||||| |||||||||||||||| |||| |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27056438 |
tggaattggaagatagtggtgcagtaacggttcta-gtgaattgaaacatttggattttcaggaaaatttaaattttgaaggctatgaattagtgaattt |
27056340 |
T |
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| Q |
200 |
tgtacc--tgcaccatgcaagatgcttgccaccatcgatacgtgttttttcttttctcctaataaacttgat |
269 |
Q |
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| |||| || |||||||| ||||||||||||| ||||||||||| |||||| |||||||||||||||||| |
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| T |
27056339 |
tttacctgtgtaccatgcatgatgcttgccaccctcgatacgtgtattttctcatctcctaataaacttgat |
27056268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 100 - 272
Target Start/End: Complemental strand, 27062480 - 27062308
Alignment:
| Q |
100 |
tggaattggaagctagtggtgcagtaacgtctctaagtgagttgaaacatttgggttttcaggaaaatttaaattttgaagtctatgaattagtgaattt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| |||||| || ||||||||||||||||| |
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| T |
27062480 |
tggaattggaagctagtggtgcagtaacggttctaacagagtggaaacatttgggttttcaggaaaatttagattttggaggttatgaattagtgaattt |
27062381 |
T |
|
| Q |
200 |
tgtacctgcaccatgcaagatgcttgccaccatcgatacgtgttttttcttttctcctaataaacttgatgat |
272 |
Q |
| |
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| ||||||||||||||||||||||||||||| ||||| | || |||||| || ||||||||||||||||| |
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| T |
27062380 |
tctacctgcaccatgcaagatgcttgccaccgtcgatgcatgcattttctcatcagctaataaacttgatgat |
27062308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 27056567 - 27056465
Alignment:
| Q |
1 |
agctcaacgaaatgccactctatgaaaccattaagctgattaaagagactaaaaatattgctttcactgctgattatgttacaaactcaataaactcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
27056567 |
agctcaacgaaatgccactctatgaaattgttaagctgattaaagagactaaaaatattgctttcattgctgattatgtcacaaactcaataaactcttt |
27056468 |
T |
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| Q |
101 |
gga |
103 |
Q |
| |
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||| |
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| T |
27056467 |
gga |
27056465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 27062601 - 27062507
Alignment:
| Q |
9 |
gaaatgccactctatgaaaccattaagctgattaaagagactaaaaatattgctttcactgctgattatgttacaaactcaataaactctttgga |
103 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
27062601 |
gaaatgccactctataaaatcgttaagctgattaaagagactaaaaatattgctttcactgctgattatgtaagaaactcaataaactctttgga |
27062507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 100 - 272
Target Start/End: Complemental strand, 27069547 - 27069375
Alignment:
| Q |
100 |
tggaattggaagctagtggtgcagtaacgtctctaagtgagttgaaacatttgggttttcaggaaaatttaaattttgaagtctatgaattagtgaattt |
199 |
Q |
| |
|
||||||||||||| |||||||||||||| | | | |||| ||| |||||||||||||| |||||| || |||||| || ||||||| | |||||||| |
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| T |
27069547 |
tggaattggaagcaagtggtgcagtaacagttttgacagagtggaagcatttgggttttcatgaaaatatagattttggaggctatgaagttgtgaattt |
27069448 |
T |
|
| Q |
200 |
tgtacctgcaccatgcaagatgcttgccaccatcgatacgtgttttttcttttctcctaataaacttgatgat |
272 |
Q |
| |
|
||||| ||||| |||||||||||||| ||| | ||| |||| |||||| ||||||||||||||||||||| |
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| T |
27069447 |
agtaccagcaccgtgcaagatgcttgctaccgttgatgcgtgcattttctcgtctcctaataaacttgatgat |
27069375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 27069668 - 27069574
Alignment:
| Q |
9 |
gaaatgccactctatgaaaccattaagctgattaaagagactaaaaatattgctttcactgctgattatgttacaaactcaataaactctttgga |
103 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||| || ||||| |||||| |||| |
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| T |
27069668 |
gaaatgccactctatgaaattgttaagctgattaaagagactaaaaatatttctttcaccactgattatgttactaattcaatcaactctgtgga |
27069574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 27045667 - 27045580
Alignment:
| Q |
1 |
agctcaacgaaatgccactctatgaaaccattaagctgattaaagagactaaaaatattgctttcactgctgattatgttacaaactc |
88 |
Q |
| |
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||||||| ||||||||||||||||||| ||||| |||| |||||| ||||||| ||||||| | | |||||||||| | |||||| |
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|
| T |
27045667 |
agctcaatgaaatgccactctatgaaattgttaagttgatcaaagaggctaaaaagattgcttcctccactgattatgtcaaaaactc |
27045580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 27079709 - 27079664
Alignment:
| Q |
227 |
caccatcgatacgtgttttttcttttctcctaataaacttgatgat |
272 |
Q |
| |
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|||| ||||||||||| |||||| ||||||||||||||||||||| |
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| T |
27079709 |
caccctcgatacgtgtattttctcatctcctaataaacttgatgat |
27079664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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